The UCSC Repeat Browser relies on a combination of Dfam 3.1 consensus sequences and automatically built consensuses.

For a few element types (e.g. recent LINE-1s), Dfam does not provide a consensus, instead providing consensuses/models for smaller subparts that RepeatMasker assembles into full-length elements.  We have generated Repeat Browser consensus sequences for these elements by aligning the longest 50 instances in the RepeatMasker output. For a few other elements (e.g. MLT endogenous retroviruses ), RepeatMasker uses a single consensus (in combination with other information like flanking LTRs) to produce multiple repeat classifications.  In these cases, we use the single sequence and have the browser map all data from these different instances to that sequence.

We also provide two custom sequences HERVH-full and HERVK-full. These two consensus versions of young human endogenous retroviruses have been shown to produce viral particles when expressed off a plasmid in cultured cells.

Collectively these sequences are known as hg38reps and are available for download here:  hg38reps.fa

Below is a table of Repeat Browser sequences, their corresponding Dfam and RepeatMasker names, and the manner in which they are mapped.  Basic statistics on coverage and chaining are also given.

hg38reps Summary

repBrowserName	RmskNames	SumCopiesInGenome	SepCopiesInGenome	LiftableCopies	SeqSources	99%Length	maxLenInGenome	consLen	consNCount	consRatio	rmskCov	covRawBlat	covBestBlat	ratio_bestToRaw	ratio_bestToRmsk
L1MC	L1MC	5696	5696	857	top50consensus	1623	3120.0	3623	47	2.9312297734627832	1656340	148352	148329	0.9998449633304572	0.0895522658391393
MER5B	MER5B	27746	27746	6046	ident_name	-	-	-1	-1	-1	3481454	348173	342181	0.9827901646595227	0.09828680775331226
MIR1_Amn	MIR1_Amn	22580	22580	1205	ident_name	-	-	-1	-1	-1	2532146	41883	41883	1.0	0.016540515436313703
Charlie15a	Charlie15a	9148	9148	391	ident_name	-	-	-1	-1	-1	1328590	15333	15320	0.9991521554816409	0.011531021609375353
L2a	L2a	135417	135417	6145	top50consensus	1326	3068.0	2979	36	2.5483319076133446	39223884	366618	366593	0.9999318091310301	0.009346167758399448
L3	L3	35711	35711	1442	ident_name	-	-	-1	-1	-1	9728522	69791	69790	0.9999856715049218	0.007173751572952192
MLT1K	MLT1K	23731	23731	2767	ident_name	-	-	-1	-1	-1	6669597	157991	157967	0.9998480926128703	0.02368463941674437
MIR	MIR	184629	184629	33711	ident_name	-	-	-1	-1	-1	29964616	1868881	1868690	0.9998977998064082	0.06236322200825133
L2b	L2b	137851	137851	126	top50consensus	921	2890.0	1564	52	1.9722572509457756	26919855	3185	3185	1.0	0.00011831415882440674
L2c	L2c	155593	155593	42	top50consensus	962	2678.0	1712	49	2.038095238095238	35309173	1311	1311	1.0	3.712916187530079e-05
AluSp	AluSp	61465	61465	60595	ident_name	-	-	-1	-1	-1	17129586	15905084	15903892	0.9999250554099557	0.9284457896413842
MER33	MER33	9218	9218	5491	ident_name	-	-	-1	-1	-1	1845054	611448	611337	0.999818463712368	0.331338269774218
MIRc	MIRc	98317	98317	5671	ident_name	-	-	-1	-1	-1	14131393	228786	228776	0.999956291031794	0.016189203711198183
MIRb	MIRb	222492	222492	22617	ident_name	-	-	-1	-1	-1	33941437	1004064	1004006	0.9999422347579437	0.029580538973644516
L1MB3	L1MB3	16209	16209	10877	top50consensus	2185	6158.0	5465	18	2.58882046423496	6613662	3028571	3027687	0.9997081131662424	0.45779282340101446
MER53	MER53	5963	5963	4227	ident_name	-	-	-1	-1	-1	773174	353563	341610	0.9661927294428433	0.44182810078973167
MLT1A1	MLT1A1	7294	7294	6220	ident_name	-	-	-1	-1	-1	2118658	1054935	1054625	0.9997061430325092	0.4977797266005179
AluJb	AluJb	131232	131232	117559	ident_name	-	-	-1	-1	-1	31063985	20996009	20975102	0.999004239329484	0.6752225125012132
L1MB5	L1MB5	9479	9479	4535	top50consensus	2031	4574.0	4469	16	2.5205865764241397	3881829	1172480	1171757	0.9993833583515284	0.30185693393500845
FLAM_C	FLAM_C	29376	29376	24303	ident_name	-	-	-1	-1	-1	3487047	2063962	2063917	0.9999781972730118	0.5918810385979885
L1PA6	L1PA6	5163	5163	5046	top50consensus	6197	8454.0	7637	2	1.2385663314952968	10241153	10001351	9996395	0.9995044669465155	0.9761005425853906
MLT1J	MLT1J	18291	18291	3205	ident_name	-	-	-1	-1	-1	5317751	202951	202885	0.9996747983503407	0.03815240691036493
MLT1J2	MLT1J2	8493	8493	1729	ident_name	-	-	-1	-1	-1	2321501	109834	109834	1.0	0.047311631569402726
AluJr	AluJr	102966	102966	93735	ident_name	-	-	-1	-1	-1	24901324	15766378	15723652	0.9972900560927818	0.6314383925931006
Charlie5	Charlie5	2772	2772	1682	ident_name	-	-	-1	-1	-1	633432	237993	237968	0.9998949548936313	0.37568042031346693
MLT1F-int	MLT1F2-int,MLT1F-int,MLT1E2-int,MLT1F1-int,MLT1E1A-int,MLT1E1-int,MLT1E3-int,MLT1E-int,MLT1M-int	1251	306,523,120,124,68,31,58,17,4	719	hmmer/rmsk_correlation,ident_name,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation	-	-	-1	-1	-1	562569	140666	140666	1.0	0.2500422170435982
MLT1F2	MLT1F2	6294	6294	3372	ident_name	-	-	-1	-1	-1	2284649	402032	401851	0.9995497870816253	0.175891789066942
AluSx	AluSx	157578	157578	152102	ident_name	-	-	-1	-1	-1	41839896	36877893	36870518	0.9998000156896165	0.8812287200713883
AluSg7	AluSg7	7280	7280	6950	ident_name	-	-	-1	-1	-1	1891337	1718378	1718320	0.99996624724013	0.9085213264479043
LTR16C	LTR16C	6919	6919	2108	ident_name	-	-	-1	-1	-1	2051152	160564	160564	1.0	0.0782799129464808
ERV3-16A3_I	ERV3-16A3_I-int	5791	5791	2072	ident_name(-int)	-	-	-1	-1	-1	3721004	307498	307450	0.9998439014237491	0.08262554944848219
MamRep1527	MamRep1527	1447	1447	185	ident_name	-	-	-1	-1	-1	474897	11312	11312	1.0	0.02381990199980206
L1M5	L1M5	92030	92030	20	top50consensus	1191	3155.0	1988	34	1.9452054794520548	23915403	556	556	1.0	2.3248615128919215e-05
L1MA7	L1MA7	7850	7850	4647	top50consensus	2879	7171.0	7067	23	2.697328244274809	3888377	1699015	1698204	0.9995226646027257	0.4367385158383562
L1MA9	L1MA9	15320	15320	7231	top50consensus	2974	7246.0	7974	15	3.0622119815668203	7780335	2758388	2755793	0.9990592331463158	0.35419978702716526
LTR12	LTR12	861	861	819	ident_name	-	-	-1	-1	-1	491777	454031	437504	0.9635994018029606	0.8896390030440626
MER45A	MER45A	3916	3916	2096	ident_name	-	-	-1	-1	-1	520470	148782	148782	1.0	0.2858608565335178
MER58A	MER58A	15120	15120	9093	ident_name	-	-	-1	-1	-1	2641363	772281	772197	0.999891231300524	0.292347927944777
L1PA14	L1PA14	3199	3199	1541	top50consensus	5183	7526.0	9520	68	2.2067686601761705	2888975	1331802	1330449	0.9989840832195777	0.4605263112349536
AluYk3	AluYk3	10923	10923	10714	ident_name	-	-	-1	-1	-1	3088395	2946359	2946350	0.9999969453824195	0.9540068546931335
FLAM_A	FLAM_A	14894	14894	9943	ident_name	-	-	-1	-1	-1	1702554	718788	718788	1.0	0.422182203912475
MER47A	MER47A	2995	2995	2459	ident_name	-	-	-1	-1	-1	793149	476158	475837	0.9993258540232444	0.5999339342292558
L1ME4c	L1ME4c	18634	18634	1	top50consensus	986	4772.0	1513	35	1.8383961117861483	4632322	34	34	1.0	7.339731564429243e-06
AluSc	AluSc	34059	34059	33522	ident_name	-	-	-1	-1	-1	9404840	8747746	8747425	0.9999633048330393	0.9300982260197941
L1PA4	L1PA4	11642	11642	11462	top50consensus	6169	8594.0	6955	4	1.1308943089430894	18206817	17866910	17850107	0.9990595463905062	0.9804078878806768
MIR3	MIR3	92776	92776	5883	ident_name	-	-	-1	-1	-1	11177423	226116	226095	0.9999071273151834	0.020227828901169795
LTR89	LTR89	1901	1901	65	ident_name	-	-	-1	-1	-1	527323	2952	2952	1.0	0.005598086941020968
L1MC5a	L1MC5a	20797	20797	9	top50consensus	1503	5455.0	2625	52	2.065302911093627	6698366	242	242	1.0	3.6128213955463166e-05
L1PA7	L1PA7	12970	12970	12720	top50consensus	6461	7783.0	7753	9	1.198670377241806	19303780	18683733	18668460	0.99918255093883	0.9670883112012258
L1PA16	L1PA16	13243	13243	4909	top50consensus	4380	7231.0	10090	86	2.6406699816801886	10508669	3698396	3695408	0.9991920821891436	0.35165328739538754
L1PA2	L1PA2	7615	7615	7502	top50consensus	6056	10103.0	6551	3	1.0837055417700578	12482518	12366103	12359131	0.9994362007173966	0.9901152155358398
AluSg	AluSg	93608	93608	91247	ident_name	-	-	-1	-1	-1	25405935	22147233	22144019	0.9998548802913664	0.8716081104671015
L1M2	L1M2	9052	9052	933	top50consensus	3325	6448.0	7455	99	3.2611548556430447	5217402	115327	105165	0.9118853347438154	0.020156583679003456
L1PREC2	L1PREC2	8480	8480	3113	top50consensus	4847	7736.0	10516	91	2.8337375370520075	6610910	2205674	2204118	0.9992945467009178	0.3334061422708825
L1PB	L1PB	1556	1556	1077	top50consensus	2744	3694.0	4764	61	2.2664129400570885	973311	558545	558398	0.9997368161920704	0.573709739230318
Tigger5b	Tigger5b	1702	1702	603	ident_name	-	-	-1	-1	-1	215902	73915	73860	0.9992559020496516	0.3420996563255551
AluSc5	AluSc5	4842	4842	4652	ident_name	-	-	-1	-1	-1	1247663	1148026	1147896	0.999886762146502	0.9200369009900911
Tigger5	Tigger5	156	156	131	ident_name	-	-	-1	-1	-1	75216	55412	55412	1.0	0.736704956392257
L1M4	L1M4	18132	18132	1325	top50consensus	2205	4500.0	5061	52	2.783828382838284	7295622	170455	170401	0.9996832008447978	0.023356610306838815
L1MC4a	L1MC4a	8145	8145	1826	top50consensus	2037	4202.0	5154	43	3.0551274451689387	3538542	215700	215509	0.9991145108947612	0.060903332502482664
HAL1M8	HAL1M8	2012	2012	1077	ident_name	-	-	-1	-1	-1	869171	204288	204167	0.999407698934837	0.23489854125367735
MLT1H2	MLT1H2	4201	4201	1134	ident_name	-	-	-1	-1	-1	1193527	76205	76205	1.0	0.06384857652989837
AluY	AluY	91833	91833	90556	ident_name	-	-	-1	-1	-1	26338764	25197014	25196505	0.9999797991936663	0.9566320196346343
Charlie4z	Charlie4z	10753	10753	820	ident_name	-	-	-1	-1	-1	1289695	33742	33742	1.0	0.026162774919651546
MER4D1	MER4D1	1491	1491	1362	ident_name	-	-	-1	-1	-1	679237	529046	528965	0.9998468942209184	0.778763524366311
MER4C	MER4C	674	674	595	ident_name	-	-	-1	-1	-1	216683	168073	168073	1.0	0.7756630653996852
L5	L5	931	931	109	ident_name	-	-	-1	-1	-1	253594	6786	6786	1.0	0.026759308185524893
L2	L2	57927	57927	3301	ident_name	-	-	-1	-1	-1	16559529	243353	243282	0.999708242758462	0.014691359881069082
MLT1H1	MLT1H1	4554	4554	1428	ident_name	-	-	-1	-1	-1	1563760	114638	114638	1.0	0.0733092034583312
UCON41	UCON41	1266	1266	57	ident_name	-	-	-1	-1	-1	288631	2570	2541	0.988715953307393	0.00880362816190915
MLT1I	MLT1I	13340	13340	2348	ident_name	-	-	-1	-1	-1	3461576	131294	131272	0.9998324371258397	0.03792261097257434
AluSx3	AluSx3	76259	76259	71429	ident_name	-	-	-1	-1	-1	19734574	15779818	15774175	0.9996423913127516	0.7993167220128491
MER124	MER124	2239	2239	114	ident_name	-	-	-1	-1	-1	445561	5901	5895	0.9989832231825114	0.013230511647114536
L3b	L3b	7407	7407	0	top50consensus	654	1224.0	1087	41	2.043233082706767	1534794	None	None	None	-1
MamRep605	MamRep605	4790	4790	450	ident_name	-	-	-1	-1	-1	1289386	23123	23123	1.0	0.017933341916229896
LTR33	LTR33	10253	10253	1773	ident_name	-	-	-1	-1	-1	3063247	110572	110572	1.0	0.03609633829723819
MSTB1	MSTB1	4351	4351	3885	ident_name	-	-	-1	-1	-1	1388899	927061	926889	0.9998144674406538	0.6673552216539863
AluSq2	AluSq2	55130	55130	54362	ident_name	-	-	-1	-1	-1	15542775	14178015	14176423	0.9998877134775214	0.9120908589360651
MLT1C	MLT1C	7130	7130	5795	ident_name	-	-	-1	-1	-1	2193559	1093315	1093068	0.9997740815775874	0.4983080008333489
AluSz6	AluSz6	50833	50833	49012	ident_name	-	-	-1	-1	-1	13323062	11045120	11041313	0.9996553228937305	0.8287368924651105
L1MEd	L1MEd	21814	21814	17	top50consensus	1706	3401.0	2734	44	1.9038997214484679	8945520	529	529	1.0	5.913574616120695e-05
LTR33B	LTR33B	2032	2032	280	ident_name	-	-	-1	-1	-1	612149	15413	15413	1.0	0.025178510460688492
MER65D	MER65D	427	427	233	ident_name	-	-	-1	-1	-1	142194	43594	43594	1.0	0.306581149696893
L1ME3E	L1ME3E	5396	5396	206	top50consensus	1748	3181.0	3398	35	2.4428468727534147	2100919	9432	9432	1.0	0.004489463896513859
MLT1D	MLT1D	18446	18446	13887	ident_name	-	-	-1	-1	-1	6083029	2301091	2300696	0.9998283422950244	0.37821552387798907
L1MC4	L1MC4	47540	47540	3363	top50consensus	1412	7672.0	3384	29	2.815307820299501	11558282	301579	301511	0.9997745201091588	0.026086143252085386
THE1D	THE1D	13271	13271	12779	ident_name	-	-	-1	-1	-1	4258388	3236257	3235510	0.9997691777877962	0.7597968996718947
L1MA5	L1MA5	4210	4210	1993	top50consensus	3801	7077.0	8738	34	2.8499673842139597	2700831	1003732	1003296	0.9995656211020472	0.3714767788136318
L1M4c	L1M4c	6121	6121	2597	top50consensus	3402	5770.0	8633	49	3.311469121595704	4355049	860660	860059	0.9993016986963493	0.19748549327458773
AluSz	AluSz	23885	23885	23337	ident_name	-	-	-1	-1	-1	6160479	5200256	5198036	0.9995730979397938	0.8437714015419905
AluSx4	AluSx4	21149	21149	20094	ident_name	-	-	-1	-1	-1	5602922	4790359	4789915	0.9999073138359776	0.85489589182216
L1M2c	L1M2c	567	567	212	top50consensus	3140	4335.0	7420	33	3.7474747474747474	380597	92153	90579	0.9829197096133604	0.23799189168595652
MER1A	MER1A	3084	3084	3014	ident_name	-	-	-1	-1	-1	1370300	1177619	1177151	0.9996025879337884	0.8590461942640297
ERVL-E	ERVL-E-int	11499	11499	2479	ident_name(-int)	-	-	-1	-1	-1	6169068	378717	378670	0.9998758967778051	0.061382043446433075
MER21C	MER21C	5400	5400	3962	ident_name	-	-	-1	-1	-1	2377621	839654	838291	0.9983767123124525	0.35257553663935504
AluJo	AluJo	24261	24261	21258	ident_name	-	-	-1	-1	-1	5268761	3234264	3227641	0.9979522389019573	0.6125996225678105
LTR41	LTR41	1021	1021	572	ident_name	-	-	-1	-1	-1	356345	84163	84095	0.9991920440098381	0.23599320882852293
L1MB8	L1MB8	16983	16983	9312	top50consensus	2160	5472.0	5612	20	2.7111111111111112	7589638	2606517	2605186	0.9994893568697231	0.34325563353614497
Tigger12c	Tigger12c	1635	1635	106	ident_name	-	-	-1	-1	-1	320460	5638	5638	1.0	0.017593459402109466
LTR37A	LTR37A	1992	1992	989	ident_name	-	-	-1	-1	-1	492435	95315	95303	0.9998741016629072	0.1935341720227035
MER11B	MER11B	968	968	958	ident_name	-	-	-1	-1	-1	895003	672360	671870	0.999271223749182	0.7506902211500966
L1ME3G	L1ME3G	35261	35261	11	top50consensus	1405	6425.0	2327	33	1.9637130801687763	10806890	316	316	1.0	2.9240604836359028e-05
U6	U6	1683	1683	1203	ident_name	-	-	-1	-1	-1	150375	88536	88536	1.0	0.5887680798004987
MER8	MER8	2298	2298	1380	ident_name	-	-	-1	-1	-1	398587	121205	121205	1.0	0.30408668621906887
AluSg4	AluSg4	6588	6588	6311	ident_name	-	-	-1	-1	-1	1659215	1476278	1476006	0.9998157528595563	0.889580916276673
Charlie29b	Charlie29b	1191	1191	144	ident_name	-	-	-1	-1	-1	272141	11853	11853	1.0	0.043554627931844156
MamRep605b	MamRep605b	4363	4363	140	ident_name	-	-	-1	-1	-1	1025771	6305	6305	1.0	0.006146596072612698
AluSx1	AluSx1	92611	92611	91522	ident_name	-	-	-1	-1	-1	26211701	23555788	23552916	0.9998780766748283	0.8985649576881714
MSTD	MSTD	8098	8098	6742	ident_name	-	-	-1	-1	-1	2351305	1045518	1045399	0.9998861808213727	0.444603741326625
HAL1ME	HAL1ME	9634	9634	747	ident_name	-	-	-1	-1	-1	2727553	43702	43702	1.0	0.01602242009596147
MLT1A	MLT1A	11885	11885	9584	ident_name	-	-	-1	-1	-1	3313245	1367851	1367349	0.9996330009628241	0.41269178705468507
MLT2B5	MLT2B5	1055	1055	403	ident_name	-	-	-1	-1	-1	177382	64136	64058	0.998783834352002	0.3611302161436899
MER31-int	MER31-int	1142	1142	679	ident_name	-	-	-1	-1	-1	554443	214748	214645	0.9995203680593068	0.3871362791125508
MER34A	MER34A	1421	1421	855	ident_name	-	-	-1	-1	-1	456600	141840	141813	0.9998096446700507	0.31058475689881737
L1MC3	L1MC3	12678	12678	4729	top50consensus	2667	8021.0	6764	36	3.2456813819577737	7042407	1153490	1152902	0.9994902426548995	0.1637085161365993
MSTA1	MSTA1	893	893	693	ident_name	-	-	-1	-1	-1	267068	122676	122676	1.0	0.45934368774993634
MER4A1	MER4A1	2425	2425	2326	ident_name	-	-	-1	-1	-1	855406	748833	748722	0.9998517693531135	0.8752826143375193
AluYk2	AluYk2	4105	4105	3920	ident_name	-	-	-1	-1	-1	1114670	1029862	1029816	0.9999553338214247	0.9238752276458504
AluSq	AluSq	16730	16730	16437	ident_name	-	-	-1	-1	-1	4668512	4238091	4237542	0.9998704605446178	0.9076857893907095
AluYm1	AluYm1	6240	6240	6071	ident_name	-	-	-1	-1	-1	1686450	1593571	1593571	1.0	0.9449263245278544
MER92-int	MER92-int	777	777	493	ident_name	-	-	-1	-1	-1	379321	150117	149924	0.9987143361511355	0.39524307908077855
MER31B	MER31B	1609	1609	1277	ident_name	-	-	-1	-1	-1	495613	202856	202520	0.9983436526402966	0.4086252781908465
L1MA4	L1MA4	9736	9736	2599	top50consensus	3649	6419.0	9062	70	3.1663172606568835	6040239	1377290	1376521	0.9994416571673359	0.2278918102412835
hAT-4b_Ther	hAT-4b_Ther	217	217	27	ident_name	-	-	-1	-1	-1	72077	2177	2177	1.0	0.030203809814503935
MER112	MER112	6467	6467	992	ident_name	-	-	-1	-1	-1	1048046	50491	50491	1.0	0.048176320505016
Ricksha_0	Ricksha_0	447	447	381	ident_name	-	-	-1	-1	-1	195709	147253	146802	0.9969372440629393	0.7501034699477285
MER46C	MER46C	3032	3032	841	ident_name	-	-	-1	-1	-1	659905	59830	59822	0.9998662878154772	0.09065244239701169
Charlie20a	Charlie20a	977	977	164	ident_name	-	-	-1	-1	-1	250159	12377	12377	1.0	0.049476532925059664
L1MD3	L1MD3	7853	7853	551	top50consensus	2060	5308.0	5120	52	3.194011228945727	2880827	58186	58124	0.9989344515862922	0.02017615080669544
AluYa8	AluYa8	893	893	622	ident_name	-	-	-1	-1	-1	108940	65243	65243	1.0	0.5988892968606573
MER39B	MER39B	1251	1251	1047	ident_name	-	-	-1	-1	-1	453232	347757	347608	0.9995715398971121	0.7669537896706322
MLT1M	MLT1M	4075	4075	193	ident_name	-	-	-1	-1	-1	1155006	8582	8582	1.0	0.007430264431526763
L1ME1	L1ME1	29936	29936	11345	top50consensus	2415	6216.0	5764	20	2.5755138516532616	15209057	2138685	2137932	0.9996479144895111	0.1405696618797602
LTR9B	LTR9B	670	670	625	ident_name	-	-	-1	-1	-1	259081	204917	204797	0.9994143970485612	0.7904747935973692
MER5A	MER5A	32858	32858	10627	ident_name	-	-	-1	-1	-1	4450452	862229	861504	0.9991591560942626	0.19357674231740957
MER4E1	MER4E1	833	833	786	ident_name	-	-	-1	-1	-1	391766	349873	349765	0.9996913165634387	0.892790594385424
MLT1E3	MLT1E3	1766	1766	1175	ident_name	-	-	-1	-1	-1	641101	176598	176598	1.0	0.27546049686398866
LTR37B	LTR37B	2125	2125	835	ident_name	-	-	-1	-1	-1	549084	72019	72019	1.0	0.1311620808473749
MLT1O	MLT1O	9160	9160	511	ident_name	-	-	-1	-1	-1	2488138	22615	22615	1.0	0.009089126085450244
Alu	Alu	5889	5889	1447	top50consensus	102	146.0	181	1	1.989010989010989	329386	70070	70070	1.0	0.21272913845761507
MSTA	MSTA	18813	18813	17182	ident_name	-	-	-1	-1	-1	5974494	4280306	4279360	0.9997789877639589	0.7162715369703275
MER103C	MER103C	13282	13282	1533	ident_name	-	-	-1	-1	-1	2298204	69922	69741	0.9974114012757073	0.030345870079418538
LTR39	LTR39	1242	1242	1029	ident_name	-	-	-1	-1	-1	476843	315166	315080	0.9997271279262357	0.6607625570680496
MLT1H	MLT1H	10257	10257	3284	ident_name	-	-	-1	-1	-1	3372945	271947	271817	0.9995219656771356	0.08058743916666296
L1ME3B	L1ME3B	7332	7332	0	top50consensus	1765	3961.0	2966	55	2.1937869822485205	2815029	None	None	None	-1
L1PA5	L1PA5	11450	11450	11260	top50consensus	6156	8954.0	6980	3	1.1360677083333333	16739461	16405321	16386288	0.9988398276388496	0.9789017698956973
L1ME3D	L1ME3D	4142	4142	135	top50consensus	1814	3628.0	3477	43	2.383139136394791	1695314	6996	6970	0.9962835906232133	0.004111332767853035
L1P4	L1P4	5359	5359	2363	top50consensus	2062	3234.0	4848	28	2.660812294182217	2137401	985628	985474	0.9998437544387944	0.4610618222785523
L1MA8	L1MA8	10284	10284	4968	top50consensus	2991	6122.0	7054	34	2.680091185410334	5179004	2057811	2056879	0.9995470915453363	0.39715725263004237
L1MA2	L1MA2	7544	7544	2258	top50consensus	5526	7682.0	11429	198	2.4743450963411995	7444656	2293497	2290881	0.9988593837271207	0.3077215387789577
LTR22C2	LTR22C2	89	89	81	ident_name	-	-	-1	-1	-1	36740	25801	25801	1.0	0.7022591181273816
L1PA15-16	L1PA15-16	1501	1501	824	top50consensus	4579	6807.0	9986	66	3.163129553373456	1577303	520098	519603	0.9990482562901607	0.32942497414891114
L1PA10	L1PA10	8025	8025	4333	top50consensus	6048	7706.0	8844	28	1.4977138018628282	8479873	5411429	5405625	0.9989274552063789	0.6374653252472059
ERVL	ERVL-int	712	712	360	ident_name(-int)	-	-	-1	-1	-1	472255	232526	232343	0.9992129912353888	0.491986320949487
L1M7	L1M7	4160	4160	3	top50consensus	1671	2841.0	2710	45	2.0878274268104775	1680582	108	108	1.0	6.42634515899849e-05
THE1B	THE1B	22718	22718	22242	ident_name	-	-	-1	-1	-1	7440101	6084899	6084039	0.9998586665119668	0.8177360764322957
THE1-int	THE1B-int,THE1A-int,THE1-int	5936	4043,1314,579	5870	hmmer/rmsk_correlation,hmmer/rmsk_correlation,ident_name	-	-	-1	-1	-1	6728991	6392293	6390276	0.999684463775362	0.9496633299108291
MLT1H-int	MLT1H1-int,MLT1H-int,MLT1G1-int,MLT1G3-int,MLT1G-int,MLT1H2-int	2292	469,786,355,171,216,295	876	hmmer/rmsk_correlation,ident_name,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation	-	-	-1	-1	-1	1033423	102184	102162	0.9997847021060049	0.09885787330067165
LTR64	LTR64	379	379	310	ident_name	-	-	-1	-1	-1	106680	68363	68343	0.9997074440852508	0.6406355455568054
MER45R	MER45R	371	371	234	ident_name	-	-	-1	-1	-1	151071	63591	63591	1.0	0.4209345274738368
AluJr4	AluJr4	7223	7223	6206	ident_name	-	-	-1	-1	-1	1437662	851721	847497	0.9950406295019144	0.5894966967200914
L2d2	L2d2	46159	46159	1	top50consensus	729	2026.0	1111	32	1.78330658105939	8742570	26	26	1.0	2.9739538831259e-06
L1P3	L1P3	3577	3577	2024	top50consensus	2755	5879.0	5148	29	2.0808407437348424	2133549	1121432	1120610	0.9992670086104195	0.5252328397426073
L1P2	L1P2	1646	1646	960	top50consensus	5421	6984.0	6918	17	1.3658440276406714	1877318	1685578	1683520	0.9987790538319793	0.8967686880965292
L1ME4b	L1ME4b	29910	29910	67	top50consensus	1307	5788.0	2322	37	2.15	8657161	2038	2038	1.0	0.0002354120478988435
AluSc8	AluSc8	24465	24465	23641	ident_name	-	-	-1	-1	-1	6737920	6094274	6093877	0.9999348568836911	0.9044151607617781
SVA_A	SVA_A	1435	1435	1063	ident_name	-	-	-1	-1	-1	972741	889843	718487	0.8074311985372701	0.7386210717960896
L4_A_Mam	L4_A_Mam	8228	8228	541	ident_name	-	-	-1	-1	-1	2482375	28111	28111	1.0	0.011324235862832972
MER3	MER3	11905	11905	6039	ident_name	-	-	-1	-1	-1	1684506	474626	471264	0.992916527960963	0.27976391891747493
MER5A1	MER5A1	17845	17845	8252	ident_name	-	-	-1	-1	-1	2213786	589881	589654	0.9996151766203691	0.26635546525273895
L1ME3	L1ME3	6840	6840	610	top50consensus	1805	4795.0	3776	52	2.636871508379888	2620991	39407	39324	0.9978937752176009	0.015003485322917934
L1MEg	L1MEg	13524	13524	13	top50consensus	1976	3563.0	3247	54	1.9548464780252859	6117303	456	456	1.0	7.454265384598409e-05
LTR104_Mam	LTR104_Mam	3489	3489	112	ident_name	-	-	-1	-1	-1	993715	4870	4870	1.0	0.004900801537664219
MER94	MER94	6695	6695	791	ident_name	-	-	-1	-1	-1	697318	38514	38514	1.0	0.05523161599155622
L1M3	L1M3	8901	8901	3237	top50consensus	1821	3118.0	4486	31	2.9748010610079576	3144256	924886	924587	0.9996767169143008	0.2940558911233691
LTR7	LTR7	2095	2095	2085	ident_name	-	-	-1	-1	-1	834099	790931	790761	0.9997850634252545	0.9480421388827945
MER67C	MER67C	1282	1282	854	ident_name	-	-	-1	-1	-1	417212	215079	215054	0.9998837636403368	0.5154549725319502
LTR67B	LTR67B	4089	4089	660	ident_name	-	-	-1	-1	-1	1011582	39648	39648	1.0	0.03919405446123003
Tigger4b	Tigger4b	2463	2463	2176	ident_name	-	-	-1	-1	-1	617518	436237	436168	0.999841829097486	0.7063243500594315
LTR79	LTR79	5654	5654	450	ident_name	-	-	-1	-1	-1	1487334	22012	22012	1.0	0.014799634782772396
Charlie1b	Charlie1b	3935	3935	1989	ident_name	-	-	-1	-1	-1	794646	252785	252720	0.999742864489586	0.3180284051011394
Tigger3a	Tigger3a	6437	6437	5514	ident_name	-	-	-1	-1	-1	1724138	984533	984303	0.9997663867031374	0.5708957171641713
Tigger15a	Tigger15a	8373	8373	495	ident_name	-	-	-1	-1	-1	1975300	23948	23948	1.0	0.012123728041310181
MER113A	MER113A	3313	3313	399	ident_name	-	-	-1	-1	-1	535996	19774	19749	0.9987357135632648	0.03684542421958373
L2d	L2d	43579	43579	1	top50consensus	619	2164.0	935	36	1.71875	8670709	20	20	1.0	2.306616448551093e-06
MER44B	MER44B	2624	2624	1926	ident_name	-	-	-1	-1	-1	704858	391097	390941	0.9996011219722984	0.5546379554463452
Chap1_Mam	Chap1_Mam	2205	2205	117	ident_name	-	-	-1	-1	-1	385351	5418	5418	1.0	0.01405990901801215
L1M8	L1M8	2158	2158	2	top50consensus	1857	3431.0	2958	46	2.200892857142857	921725	74	74	1.0	8.028424964061949e-05
MER102c	MER102c	5038	5038	408	ident_name	-	-	-1	-1	-1	822003	19334	19334	1.0	0.023520595423617674
Tigger7	Tigger7	1958	1958	1649	ident_name	-	-	-1	-1	-1	609961	362746	362666	0.9997794600078291	0.5945724398773037
MER44D	MER44D	802	802	594	ident_name	-	-	-1	-1	-1	235134	147993	147993	1.0	0.6293985557171655
MER44C	MER44C	1069	1069	886	ident_name	-	-	-1	-1	-1	482276	301849	301827	0.9999271158758187	0.6258387313488541
MER41D	MER41D	482	482	374	ident_name	-	-	-1	-1	-1	140943	96483	96483	1.0	0.6845533300696026
HAL1	HAL1	22358	22358	4923	ident_name	-	-	-1	-1	-1	8823624	451036	451013	0.9999490062877464	0.05111425872181317
LTR78	LTR78	5858	5858	461	ident_name	-	-	-1	-1	-1	2430759	24655	24655	1.0	0.010142922436983675
L1M4b	L1M4b	4153	4153	1023	top50consensus	2654	4277.0	5844	63	2.7579046720151013	2396691	150750	150707	0.999714759535655	0.06288128089937334
MLT1B	MLT1B	15296	15296	12781	ident_name	-	-	-1	-1	-1	4285336	2338894	2338261	0.9997293592612577	0.5456423953687646
L1MC1	L1MC1	12159	12159	9085	top50consensus	3098	6471.0	6735	19	2.279187817258883	7363027	3858507	3857078	0.9996296494991457	0.5238440657626272
Charlie19a	Charlie19a	2729	2729	248	ident_name	-	-	-1	-1	-1	506724	14650	14650	1.0	0.02891120215344053
EUTREP14	EUTREP14	631	631	60	ident_name	-	-	-1	-1	-1	124314	2932	2932	1.0	0.023585436877584184
Tigger22N1	Tigger22N1	1289	1289	109	ident_name	-	-	-1	-1	-1	297593	7044	7043	0.9998580352072686	0.023666551296569475
MARNA	MARNA	4619	4619	348	ident_name	-	-	-1	-1	-1	1020487	18237	18032	0.9887591160826891	0.0176699948162005
L1ME4a	L1ME4a	21937	21937	346	top50consensus	1168	6329.0	2510	29	2.4777887462981245	7462143	12427	12422	0.9995976502776213	0.0016646692511789174
LTR2C	LTR2C	255	255	214	ident_name	-	-	-1	-1	-1	82373	70409	70390	0.9997301481344715	0.854527575783327
L1MB4	L1MB4	8776	8776	4077	top50consensus	2130	6013.0	5183	30	2.7423280423280425	3697238	1084993	1083978	0.9990645100936135	0.29318588632920034
AluYe5	AluYe5	1481	1481	1373	ident_name	-	-	-1	-1	-1	360419	333111	333111	1.0	0.9242326292454061
LTR41B	LTR41B	765	765	413	ident_name	-	-	-1	-1	-1	287314	49031	49031	1.0	0.17065301377586892
LOR1-int	LOR1-int	1031	1031	783	ident_name	-	-	-1	-1	-1	640750	454764	454517	0.9994568611411633	0.7093515411626999
LTR57-int	LTR57-int	310	310	193	ident_name	-	-	-1	-1	-1	161174	109215	109215	1.0	0.6776217007705958
LTR49-int	LTR49-int	1808	1808	1233	ident_name	-	-	-1	-1	-1	990399	471663	471310	0.9992515842879344	0.47587891344801436
AluYf1	AluYf1	3103	3103	2998	ident_name	-	-	-1	-1	-1	844026	789698	789658	0.999949347725333	0.9355849227393469
HERVK9	HERVK9-int	607	607	596	ident_name(-int)	-	-	-1	-1	-1	975254	945878	945853	0.9999735695301085	0.9698529818898461
MER9a2	MER9a2	248	248	246	ident_name	-	-	-1	-1	-1	108728	107227	107227	1.0	0.9861949083952616
MER102a	MER102a	3620	3620	459	ident_name	-	-	-1	-1	-1	629422	23528	23528	1.0	0.037380326712444116
MER67A	MER67A	469	469	313	ident_name	-	-	-1	-1	-1	122944	60065	60065	1.0	0.48855576522644456
HERV16	HERV16-int	3075	3075	834	ident_name(-int)	-	-	-1	-1	-1	1626430	105624	105623	0.9999905324547451	0.06494162060463715
L1MEc	L1MEc	19831	19831	2116	top50consensus	2223	4484.0	4924	60	2.5619146722164414	10148852	161374	161194	0.9988845786805806	0.015882978685668094
MER63A	MER63A	5272	5272	1851	ident_name	-	-	-1	-1	-1	864698	120576	120576	1.0	0.1394429037652452
FAM	FAM	3886	3886	2733	ident_name	-	-	-1	-1	-1	504451	229440	229440	1.0	0.4548310936047307
AluYh3	AluYh3	3169	3169	2953	ident_name	-	-	-1	-1	-1	678855	619879	619816	0.9998983672619979	0.9130315015725008
MLT1G3	MLT1G3	2454	2454	987	ident_name	-	-	-1	-1	-1	800153	97289	97227	0.9993627234322483	0.12151051111474931
AluYa5	AluYa5	4408	4408	4264	ident_name	-	-	-1	-1	-1	1186326	1148767	1148766	0.9999991295014568	0.9683392254742794
MLT1C2	MLT1C2	15792	15792	11816	ident_name	-	-	-1	-1	-1	4942342	1914864	1914228	0.9996678615295916	0.3873119262082632
LTR12C	LTR12C	2039	2039	1988	ident_name	-	-	-1	-1	-1	1977882	1854891	1780163	0.959712996612739	0.9000349869203522
LTR13A	LTR13A	208	208	203	ident_name	-	-	-1	-1	-1	164409	153953	153953	1.0	0.9364025083784951
MER20	MER20	17239	17239	11860	ident_name	-	-	-1	-1	-1	3099790	1158445	1158440	0.9999956838693248	0.3737156388013382
L1MEf	L1MEf	9216	9216	1487	top50consensus	2396	4167.0	5131	46	2.617857142857143	4869925	140254	140199	0.9996078543214454	0.028788739046289213
L1M4a1	L1M4a1	2747	2747	457	top50consensus	2286	4355.0	4796	40	3.0068965517241377	1406361	40690	40690	1.0	0.028932827346605884
MER49	MER49	1325	1325	1075	ident_name	-	-	-1	-1	-1	543426	357146	357126	0.9999440004927956	0.6571750339512648
L1ME2z	L1ME2z	7292	7292	1029	top50consensus	1846	5635.0	4386	31	2.9675236806495264	2404308	141411	141411	1.0	0.058815675861828016
MER50	MER50	2466	2466	2297	ident_name	-	-	-1	-1	-1	1060493	813464	813226	0.9997074240531849	0.7668376877546575
L1PB1	L1PB1	11181	11181	6639	top50consensus	6269	8879.0	8877	16	1.4392023346303502	11348851	8409347	8402994	0.9992445311151984	0.7404268502599954
MamRep1151	MamRep1151	1576	1576	377	ident_name	-	-	-1	-1	-1	447121	30857	30841	0.9994814790809217	0.06897685414015446
L1MD	L1MD	6954	6954	1009	top50consensus	1616	3160.0	4329	34	3.5166531275385866	2229985	151496	151470	0.999828378307018	0.06792422370554062
MLT1E	MLT1E	787	787	517	ident_name	-	-	-1	-1	-1	258833	82782	82719	0.9992389649923896	0.31958444247835477
AluSq4	AluSq4	2642	2642	2545	ident_name	-	-	-1	-1	-1	679580	609921	609762	0.9997393105008682	0.8972630153918597
MER41B	MER41B	2817	2817	2611	ident_name	-	-	-1	-1	-1	1047581	911808	911639	0.9998146539622377	0.8702324688973931
MER30	MER30	4159	4159	4016	ident_name	-	-	-1	-1	-1	765650	643816	643762	0.999916125104067	0.8408045451577091
SVA_E	SVA_E	471	471	193	ident_name	-	-	-1	-1	-1	254772	225794	132540	0.5869952257367335	0.5202298525740662
Arthur1B	Arthur1B	2627	2627	1054	ident_name	-	-	-1	-1	-1	794344	111174	111174	1.0	0.13995699596144742
L1M3e	L1M3e	1351	1351	204	top50consensus	2402	5208.0	5443	65	3.5436197916666665	733605	22445	20723	0.9232791267542882	0.028248171700029308
LTR46	LTR46	263	263	221	ident_name	-	-	-1	-1	-1	78236	55439	55347	0.9983405184076192	0.7074364742573751
MER9a1	MER9a1	402	402	394	ident_name	-	-	-1	-1	-1	189599	186783	186783	1.0	0.9851476009894568
MADE2	MADE2	3339	3339	913	ident_name	-	-	-1	-1	-1	228444	39490	39195	0.9925297543681945	0.17157377738088986
LTR13	LTR13	483	483	473	ident_name	-	-	-1	-1	-1	416184	394420	394334	0.9997819583185437	0.9474991830536493
MER54A	MER54A	722	722	581	ident_name	-	-	-1	-1	-1	325777	176393	176342	0.9997108728804431	0.5412966538460358
MER68	MER68	1465	1465	1165	ident_name	-	-	-1	-1	-1	544826	279024	279024	1.0	0.5121341492513206
MER77	MER77	1148	1148	837	ident_name	-	-	-1	-1	-1	441541	159662	159619	0.9997306810637472	0.3615043676578166
MER4B	MER4B	1946	1946	1788	ident_name	-	-	-1	-1	-1	758662	567682	567650	0.9999436304128015	0.7482251648296606
MER4B-int	MER4B-int	1259	1259	930	ident_name	-	-	-1	-1	-1	702181	433924	433463	0.9989376019763829	0.6173094971239609
LTR16B1	LTR16B1	1345	1345	519	ident_name	-	-	-1	-1	-1	438224	48453	48453	1.0	0.11056674212275001
FRAM	FRAM	6048	6048	4323	ident_name	-	-	-1	-1	-1	829955	362092	362068	0.99993371850248	0.436250158141104
MER63B	MER63B	1555	1555	896	ident_name	-	-	-1	-1	-1	373664	120596	120566	0.9997512355302	0.3226588592960521
MER66C	MER66C	671	671	465	ident_name	-	-	-1	-1	-1	174819	117006	116841	0.9985898159068766	0.6683541262677398
AluYk4	AluYk4	3196	3196	3092	ident_name	-	-	-1	-1	-1	803663	755682	755628	0.9999285413705765	0.9402299222435274
MER66-int	MER66-int	745	745	497	ident_name	-	-	-1	-1	-1	456109	253444	253231	0.9991595776581809	0.555198428445832
MLT2C1	MLT2C1	2865	2865	1715	ident_name	-	-	-1	-1	-1	721512	249499	249439	0.9997595180742207	0.3457170497510783
7SLRNA	7SLRNA	1468	1468	1043	ident_name	-	-	-1	-1	-1	258907	172743	172718	0.9998552763353653	0.6671044042841638
AluYe6	AluYe6	485	485	403	ident_name	-	-	-1	-1	-1	101065	78656	78656	1.0	0.7782714094889428
MER74B	MER74B	1203	1203	773	ident_name	-	-	-1	-1	-1	404563	109096	109096	1.0	0.26966381008643897
LTR5_Hs	LTR5_Hs	609	609	569	ident_name	-	-	-1	-1	-1	498572	480617	480543	0.9998460312473342	0.9638387233940133
LTR2B	LTR2B	324	324	315	ident_name	-	-	-1	-1	-1	144358	130765	130765	1.0	0.9058382632067499
Harlequin	Harlequin-int	557	557	449	ident_name(-int)	-	-	-1	-1	-1	785692	714686	713704	0.9986259700064084	0.9083763103098924
LTR75	LTR75	292	292	173	ident_name	-	-	-1	-1	-1	94024	25608	25608	1.0	0.27235599421424317
MERX	MERX	381	381	93	ident_name	-	-	-1	-1	-1	87151	7881	7881	1.0	0.09042925497125678
LTR10A	LTR10A	318	318	297	ident_name	-	-	-1	-1	-1	139864	107241	106638	0.9943771505301144	0.7624406566378767
HERVIP10FH	HERVIP10FH-int	896	896	758	ident_name(-int)	-	-	-1	-1	-1	471215	308920	274006	0.8869804480124304	0.5814882802966799
Charlie22a	Charlie22a	1569	1569	133	ident_name	-	-	-1	-1	-1	312983	8215	8215	1.0	0.026247431969148485
HERV35I	HERV35I-int	694	694	496	ident_name(-int)	-	-	-1	-1	-1	481479	255833	255406	0.9983309424507394	0.5304613493008002
AluSq10	AluSq10	4440	4440	4274	ident_name	-	-	-1	-1	-1	1185799	1060372	1060058	0.999703877507139	0.8939609495369789
AluYk12	AluYk12	196	196	162	ident_name	-	-	-1	-1	-1	42414	32597	32597	1.0	0.7685434054793229
LTR7B	LTR7B	778	778	753	ident_name	-	-	-1	-1	-1	288695	261029	258307	0.9895720398882882	0.894740123659918
LTR7Y	LTR7Y	455	455	387	ident_name	-	-	-1	-1	-1	151394	126162	125607	0.9956008940885528	0.8296696038152106
L1MB7	L1MB7	19009	19009	9162	top50consensus	2252	7562.0	6622	17	3.1638795986622075	8914732	2600094	2599013	0.9995842458003441	0.2915413497567846
MER47C	MER47C	1168	1168	92	ident_name	-	-	-1	-1	-1	89225	4171	4158	0.9968832414289139	0.04660128887643598
AluYj4	AluYj4	2666	2666	2518	ident_name	-	-	-1	-1	-1	709029	650838	650787	0.9999216394863237	0.9178566744096504
MER65A	MER65A	1428	1428	1238	ident_name	-	-	-1	-1	-1	417316	281790	281599	0.9993221902835445	0.6747860134765981
MER65-int	MER65-int	1216	1216	718	ident_name	-	-	-1	-1	-1	712218	280913	280839	0.9997365732450972	0.39431606614828607
MER52A	MER52A	1400	1400	1178	ident_name	-	-	-1	-1	-1	1453508	802864	793951	0.9888984933936508	0.5462309116977684
MER52C	MER52C	433	433	368	ident_name	-	-	-1	-1	-1	313331	228317	223319	0.9781093830069596	0.7127255202964278
MER83	MER83	470	470	436	ident_name	-	-	-1	-1	-1	144713	110368	110344	0.9997825456654102	0.7625023322023592
MER21B	MER21B	2677	2677	2148	ident_name	-	-	-1	-1	-1	1168623	676829	676718	0.999835999934991	0.579072977341709
AluYc	AluYc	6114	6114	5719	ident_name	-	-	-1	-1	-1	1210554	1094709	1094446	0.9997597535052695	0.9040868891433178
MER113	MER113	4495	4495	921	ident_name	-	-	-1	-1	-1	966379	67161	67115	0.9993150786915025	0.06944997770026046
THE1C	THE1C	8888	8888	8657	ident_name	-	-	-1	-1	-1	2975094	2486223	2485693	0.9997868252365134	0.835500659811085
LTR26E	LTR26E	195	195	166	ident_name	-	-	-1	-1	-1	73026	41514	41458	0.9986510574745869	0.5677156081395667
LTR42	LTR42	289	289	258	ident_name	-	-	-1	-1	-1	104952	57880	57880	1.0	0.5514902050461163
MER4D	MER4D	1289	1289	1051	ident_name	-	-	-1	-1	-1	524835	334241	334138	0.9996918391220706	0.6366534244095764
L1P4c	L1P4c	114	114	22	top50consensus	2551	4080.0	3834	33	7.562130177514793	54711	2744	2717	0.9901603498542274	0.04966094569647786
L1M4a2	L1M4a2	1887	1887	522	top50consensus	2450	3803.0	5985	48	3.575268817204301	965975	91478	91478	1.0	0.09470017339993271
Tigger1	Tigger1,Tigger1a_Art,Tigger1a_Mars	12807	12457,316,34	11575	ident_name,hmmer/rmsk_correlation,hmmer/rmsk_correlation	-	-	-1	-1	-1	9237788	7712362	7709760	0.9996626195710212	0.8345894060352976
MER65B	MER65B	162	162	101	ident_name	-	-	-1	-1	-1	44081	13489	13489	1.0	0.30600485469930355
AluYc3	AluYc3	1118	1118	933	ident_name	-	-	-1	-1	-1	207133	175649	175621	0.999840591178999	0.8478658639618023
L1MC5	L1MC5	14543	14543	2005	top50consensus	1538	6461.0	3518	23	3.0197424892703864	4504634	182373	182348	0.9998629183047929	0.040480092278307185
ORSL-2b	ORSL-2b	691	691	209	ident_name	-	-	-1	-1	-1	167056	20506	20506	1.0	0.12274925773393353
L1MA10	L1MA10	4219	4219	2158	top50consensus	2299	5985.0	6262	23	3.1932687404385516	1725937	614271	613871	0.9993488216113083	0.3556740483575009
AluYg6	AluYg6	1189	1189	1012	ident_name	-	-	-1	-1	-1	239472	191991	191991	1.0	0.8017262978552816
L1P5	L1P5	1179	1179	453	top50consensus	528	1558.0	971	2	2.1918735891647856	174368	67827	67671	0.9977000309611217	0.3880929987153606
L1MEa	L1MEa	296	296	41	top50consensus	1765	2322.0	3006	14	3.8341836734693877	120476	4067	4067	1.0	0.03375776088183539
AluYh9	AluYh9	721	721	469	ident_name	-	-	-1	-1	-1	118311	61637	61581	0.9990914548079887	0.5205010523112813
L1MD2	L1MD2	11083	11083	2992	top50consensus	2408	4986.0	5463	45	2.6937869822485205	5224622	533863	533564	0.9994399312183088	0.10212490013631609
Tigger16a	Tigger16a	1724	1724	129	ident_name	-	-	-1	-1	-1	473968	7933	7933	1.0	0.016737416872025117
Arthur1A	Arthur1A	1804	1804	460	ident_name	-	-	-1	-1	-1	234023	24981	24981	1.0	0.10674591813625156
BC200	BC200	1924	1924	879	ident_name	-	-	-1	-1	-1	153000	75799	75799	1.0	0.49541830065359477
Tigger10	Tigger10	1922	1922	122	ident_name	-	-	-1	-1	-1	534359	7528	7528	1.0	0.014087907193478542
X26_DNA	X26_DNA	1236	1236	154	ident_name	-	-	-1	-1	-1	320950	10392	10392	1.0	0.03237887521420782
Tigger2	Tigger2	2605	2605	2348	ident_name	-	-	-1	-1	-1	1614415	1268438	1267582	0.9993251542448272	0.7851649049346048
MER77B	MER77B	1556	1556	932	ident_name	-	-	-1	-1	-1	648409	137808	137680	0.9990711714849646	0.21233511564460086
L1MCa	L1MCa	6936	6936	2761	top50consensus	2878	5335.0	7240	59	3.4312796208530805	4184817	675514	674842	0.9990052019647261	0.16125962019366677
MER47B	MER47B	1175	1175	640	ident_name	-	-	-1	-1	-1	254055	111097	111030	0.999396923409273	0.43703135147901045
Tigger16b	Tigger16b	3703	3703	171	ident_name	-	-	-1	-1	-1	531689	7236	7168	0.9906025428413489	0.013481565351173336
MER119	MER119	1262	1262	651	ident_name	-	-	-1	-1	-1	326199	94402	94402	1.0	0.28940002881676524
L1PA3	L1PA3	8282	8282	8125	top50consensus	6168	10721.0	6734	1	1.0933593115765545	16635987	16382782	16373698	0.9994455154197864	0.9842336375954129
MER58C	MER58C	3534	3534	1437	ident_name	-	-	-1	-1	-1	490955	86979	86979	1.0	0.1771628764347038
hAT-1_Mam	hAT-1_Mam	1678	1678	231	ident_name	-	-	-1	-1	-1	500127	16134	16134	1.0	0.032259806009273646
MER1B	MER1B	5587	5587	5266	ident_name	-	-	-1	-1	-1	1578128	1229052	1227882	0.99904804678728	0.7780623624953109
LSU-rRNA_Hsa	LSU-rRNA_Hsa	288	288	203	ident_name	-	-	-1	-1	-1	90047	57878	57878	1.0	0.6427532288693683
LTR16A	LTR16A	4159	4159	1120	ident_name	-	-	-1	-1	-1	1226212	93431	93431	1.0	0.07619481786183792
MLT2D	MLT2D	4474	4474	3421	ident_name	-	-	-1	-1	-1	1162783	570791	570659	0.9997687419738573	0.4907699888973265
L1MB2	L1MB2	8603	8603	4819	top50consensus	2212	6003.0	4827	13	2.388421573478476	3590511	1417114	1416724	0.9997247927830788	0.3945744770034126
MER88	MER88	119	119	88	ident_name	-	-	-1	-1	-1	38542	19402	19402	1.0	0.5033988895231176
LTR16A1	LTR16A1	2838	2838	1056	ident_name	-	-	-1	-1	-1	798371	86931	86931	1.0	0.10888546803428481
Charlie2b	Charlie2b	3284	3284	1067	ident_name	-	-	-1	-1	-1	916628	109935	109935	1.0	0.11993414994959788
MER81	MER81	4086	4086	803	ident_name	-	-	-1	-1	-1	386725	41503	41380	0.9970363588174349	0.10700109897213782
L1ME3Cz	L1ME3Cz	16210	16210	7	top50consensus	1652	6304.0	2680	40	1.9633699633699633	5741014	170	170	1.0	2.961149371870544e-05
MER89	MER89	1428	1428	1073	ident_name	-	-	-1	-1	-1	431506	222634	222518	0.9994789654769711	0.5156776499052157
MER91B	MER91B	1157	1157	231	ident_name	-	-	-1	-1	-1	157721	11550	11550	1.0	0.07323057804604333
MER31A	MER31A	1289	1289	1054	ident_name	-	-	-1	-1	-1	407064	264604	264350	0.99904007497997	0.6494064815360729
MSTB	MSTB	9408	9408	8522	ident_name	-	-	-1	-1	-1	3013242	1979413	1978867	0.9997241606476264	0.6567235555590955
LTR18B	LTR18B	375	375	345	ident_name	-	-	-1	-1	-1	162055	107241	107111	0.998787777062877	0.6609546141742001
Charlie1	Charlie1	2505	2505	1587	ident_name	-	-	-1	-1	-1	809068	315152	315102	0.9998413463979287	0.3894629376022782
Tigger19a	Tigger19a	3936	3936	172	ident_name	-	-	-1	-1	-1	661664	7536	7536	1.0	0.01138946655704406
MER102b	MER102b	6987	6987	757	ident_name	-	-	-1	-1	-1	1379072	37262	37262	1.0	0.0270196189901615
LTR16E1	LTR16E1	2785	2785	662	ident_name	-	-	-1	-1	-1	853057	43115	43115	1.0	0.050541757467554925
MLT1A0	MLT1A0	18722	18722	16222	ident_name	-	-	-1	-1	-1	5261791	2859033	2858416	0.9997841927672748	0.5432401248928359
LTR81A	LTR81A	1123	1123	86	ident_name	-	-	-1	-1	-1	454800	5212	5212	1.0	0.011459982409850484
AluYi6_4d	AluYi6_4d	364	364	286	ident_name	-	-	-1	-1	-1	75657	44121	44101	0.9995467011173818	0.5829070674227104
MER58B	MER58B	5528	5528	3549	ident_name	-	-	-1	-1	-1	1269283	422922	422828	0.9997777367930729	0.33312350358430703
MER74A	MER74A	1423	1423	1139	ident_name	-	-	-1	-1	-1	524788	246176	246109	0.9997278369946705	0.46896842153402896
Charlie1a	Charlie1a	4300	4300	2983	ident_name	-	-	-1	-1	-1	1910690	783035	782789	0.9996858377977996	0.40968916988103776
LTR52	LTR52	1094	1094	634	ident_name	-	-	-1	-1	-1	303608	72863	72863	1.0	0.23999038233511633
MER104	MER104	3702	3702	660	ident_name	-	-	-1	-1	-1	483807	33508	33508	1.0	0.06925902270946886
MLT1-int	MLT1-int,MLT1C2-int,MLT1C-int,MLT1D-int,MLT1B-int,MLT1A-int	2089	246,385,118,491,364,485	1401	ident_name,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation	-	-	-1	-1	-1	1053743	350305	350035	0.9992292430881661	0.3321825150914407
MLT-int	MLT-int,MLT1A0-int,MLT1A1-int,MSTD-int,MSTC-int,MSTB2-int	2652	387,747,478,766,168,106	2124	ident_name,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation	-	-	-1	-1	-1	1749802	780291	779870	0.9994604577010372	0.44569042668827674
Charlie16	Charlie16	855	855	156	ident_name	-	-	-1	-1	-1	298035	12816	12796	0.9984394506866417	0.04293455466639824
Ricksha	Ricksha	700	700	301	ident_name	-	-	-1	-1	-1	211290	126351	126000	0.9972220243607095	0.5963367883004401
MLT2B3	MLT2B3	4743	4743	3942	ident_name	-	-	-1	-1	-1	2079980	967661	967547	0.9998821901471693	0.4651712997240358
MER91A	MER91A	4419	4419	219	ident_name	-	-	-1	-1	-1	589629	8504	8504	1.0	0.01442262846637462
Charlie15b	Charlie15b	2154	2154	309	ident_name	-	-	-1	-1	-1	477671	18464	18387	0.9958297227036396	0.03849302134732902
MLT2B1	MLT2B1	4162	4162	3277	ident_name	-	-	-1	-1	-1	1323789	638712	637701	0.9984171269680231	0.48172405118942674
Charlie2a	Charlie2a	2653	2653	760	ident_name	-	-	-1	-1	-1	795338	82122	82122	1.0	0.1032542139316869
THE1A	THE1A	4017	4017	3959	ident_name	-	-	-1	-1	-1	1290213	1181156	1181006	0.9998730057672314	0.9153573867260677
Charlie7	Charlie7,Charlie7b_Mars	3762	3707,55	982	ident_name,hmmer/rmsk_correlation	-	-	-1	-1	-1	1182973	92201	92164	0.9995987028340256	0.07790879419902229
MER45B	MER45B	1275	1275	892	ident_name	-	-	-1	-1	-1	486345	202438	202398	0.9998024086386943	0.4161613669308824
LTR81C	LTR81C	1192	1192	58	ident_name	-	-	-1	-1	-1	440958	2603	2603	1.0	0.005903056526925467
Tigger2a	Tigger2a	3821	3821	3228	ident_name	-	-	-1	-1	-1	1100241	752127	751635	0.999345855154781	0.6831548724324943
MER66B	MER66B	1329	1329	1147	ident_name	-	-	-1	-1	-1	431147	312554	312434	0.9996160663437358	0.724657715349985
LTR41C	LTR41C	838	838	396	ident_name	-	-	-1	-1	-1	292129	36161	36161	1.0	0.1237843555415587
MER34C	MER34C	616	616	493	ident_name	-	-	-1	-1	-1	202184	113794	113688	0.9990684921876373	0.5622996874134452
MER63D	MER63D	824	824	499	ident_name	-	-	-1	-1	-1	190799	65167	65131	0.9994475731581935	0.3413592314425128
LTR26	LTR26	609	609	541	ident_name	-	-	-1	-1	-1	249474	169599	169538	0.9996403280679721	0.6795818401917635
LTR40c	LTR40c	767	767	458	ident_name	-	-	-1	-1	-1	241728	58931	58931	1.0	0.2437905414350013
MER34	MER34	1683	1683	940	ident_name	-	-	-1	-1	-1	530161	144129	144129	1.0	0.27185892587346105
LTR33A	LTR33A	3478	3478	858	ident_name	-	-	-1	-1	-1	1083933	61187	61187	1.0	0.05644906096594531
LTR19A	LTR19A	471	471	439	ident_name	-	-	-1	-1	-1	152822	128102	127984	0.9990788590342071	0.8374710447448666
L1MCc	L1MCc	3586	3586	529	top50consensus	1924	3313.0	4165	49	2.585350713842334	1632282	58327	58327	1.0	0.0357334088104874
MST-int	MSTA-int,MST-int,MSTB-int,MSTA1-int,MSTB1-int	4859	2873,741,1021,30,194	4375	hmmer/rmsk_correlation,ident_name,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation	-	-	-1	-1	-1	4069333	3124844	3124089	0.999758387938726	0.7677152496490212
HERVL	HERVL-int	1940	1940	1879	ident_name(-int)	-	-	-1	-1	-1	3603209	3490092	3488897	0.9996576021491697	0.9682749460272774
LTR27C	LTR27C	128	128	113	ident_name	-	-	-1	-1	-1	75447	48650	48650	1.0	0.6448235184964279
MER117	MER117	7072	7072	423	ident_name	-	-	-1	-1	-1	955035	19123	19123	1.0	0.020023349929583732
L1MEb	L1MEb	2398	2398	411	top50consensus	1323	1987.0	3060	18	2.979552093476144	921967	37192	37192	1.0	0.04033983862762984
LTR106_Mam	LTR106_Mam	738	738	176	ident_name	-	-	-1	-1	-1	235695	15326	15326	1.0	0.06502471414327839
LTR16E2	LTR16E2	2709	2709	341	ident_name	-	-	-1	-1	-1	870494	20509	20509	1.0	0.023560185366010563
LTR12D	LTR12D	1054	1054	1036	ident_name	-	-	-1	-1	-1	800696	672485	646111	0.9607812813668707	0.8069367150578997
LTR12E	LTR12E	1485	1485	1455	ident_name	-	-	-1	-1	-1	1567873	1402366	1367372	0.975046457201615	0.8721191065858013
MER75	MER75	492	492	457	ident_name	-	-	-1	-1	-1	182533	161995	161995	1.0	0.8874833591734097
MLT2B4	MLT2B4	4278	4278	3000	ident_name	-	-	-1	-1	-1	1278931	602966	602069	0.998512353930404	0.4707595640421571
Tigger17a	Tigger17a	2576	2576	2029	ident_name	-	-	-1	-1	-1	986998	516750	516750	1.0	0.5235572919094061
Charlie25	Charlie25	1097	1097	236	ident_name	-	-	-1	-1	-1	459245	22986	22986	1.0	0.05005171531535455
L1ME3A	L1ME3A	15907	15907	43	top50consensus	1913	5224.0	3323	61	2.0386503067484663	6633099	1288	1288	1.0	0.00019417771391622528
MER51A	MER51A	634	634	611	ident_name	-	-	-1	-1	-1	265091	218759	215123	0.983378969550967	0.8115062374807142
MER96	MER96	1414	1414	460	ident_name	-	-	-1	-1	-1	163854	26421	26090	0.9874720865977821	0.15922711682351362
LTR40b	LTR40b	1003	1003	681	ident_name	-	-	-1	-1	-1	298586	86028	86025	0.9999651276328637	0.2881079487986711
L1ME2	L1ME2	12645	12645	499	top50consensus	2162	5015.0	4228	64	2.342382271468144	6071572	23297	23297	1.0	0.003837062296222461
MLT1E1A	MLT1E1A	2687	2687	1685	ident_name	-	-	-1	-1	-1	1018061	226303	226277	0.9998851097864367	0.22226271313801432
LTR50	LTR50	2371	2371	910	ident_name	-	-	-1	-1	-1	840692	86309	86239	0.9991889605950712	0.10258096901124313
MER107	MER107	331	331	303	ident_name	-	-	-1	-1	-1	51411	45371	45362	0.999801635405876	0.8823403551769077
MamGypLTR2b	MamGypLTR2b	1235	1235	81	ident_name	-	-	-1	-1	-1	407806	4288	4288	1.0	0.01051480360759773
MER45C	MER45C	1212	1212	652	ident_name	-	-	-1	-1	-1	371468	55948	55948	1.0	0.1506132425942477
THE1D-int	THE1C-int,THE1D-int	4077	1617,2460	3892	hmmer/rmsk_correlation,ident_name	-	-	-1	-1	-1	4087936	3667176	3665051	0.9994205350384056	0.8965529303785578
CR1_Mam	CR1_Mam	2896	2896	149	ident_name	-	-	-1	-1	-1	795404	8895	8895	1.0	0.011182996313822913
MER121	MER121	1374	1374	310	ident_name	-	-	-1	-1	-1	307197	22503	22503	1.0	0.07325266848309066
L1PA12	L1PA12	1674	1674	559	top50consensus	4718	6928.0	9287	112	2.9296529968454257	1368094	112010	93488	0.8346397643067583	0.06833448578825724
MLT1J-int	MLT1J-int,MLT1J1-int,MLT1I-int,MLT1K-int,MLT1J2-int,MLT1O-int,MLT1L-int,MLT1N2-int	4145	1276,483,965,400,719,71,148,83	731	ident_name,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation,hmmer/rmsk_correlation	-	-	-1	-1	-1	1698841	60025	60025	1.0	0.035332912261948
L1MDa	L1MDa	7431	7431	2456	top50consensus	2634	5846.0	6670	29	3.4976402726796016	4183466	604480	604068	0.9993184224457385	0.14439414590676725
Eutr2	Eutr2	340	340	34	ident_name	-	-	-1	-1	-1	53564	1590	1577	0.9918238993710692	0.02944141587633485
L1MA4A	L1MA4A	5961	5961	1136	top50consensus	4306	7111.0	10157	180	3.236775015933716	4870301	745059	744738	0.9995691616368637	0.15291416280020476
L1PA15	L1PA15	8284	8284	5239	top50consensus	5256	7570.0	10962	35	2.3024574669187143	7781833	4355696	4352019	0.9991558180368878	0.5592537131033267
L1MEh	L1MEh	4212	4212	3	top50consensus	1688	3263.0	2911	46	2.2496136012364762	1653232	105	105	1.0	6.35119571844726e-05
tRNA-Gly-GGA	tRNA-Gly-GGA	129	129	96	ident_name	-	-	-1	-1	-1	5376	3711	3711	1.0	0.6902901785714286
UCON16	UCON16	42	42	13	ident_name	-	-	-1	-1	-1	6370	834	834	1.0	0.13092621664050236
UCON7	UCON7	153	153	34	ident_name	-	-	-1	-1	-1	23532	1725	1702	0.9866666666666667	0.07232704402515723
Eulor10	Eulor10	57	57	9	ident_name	-	-	-1	-1	-1	9942	442	442	1.0	0.04445785556226112
UCON26	UCON26	390	390	11	ident_name	-	-	-1	-1	-1	78004	560	560	1.0	0.00717911901953746
Eulor11	Eulor11	119	119	32	ident_name	-	-	-1	-1	-1	24284	2296	2228	0.9703832752613241	0.09174765277549003
X30_DNA	X30_DNA	1307	1307	122	ident_name	-	-	-1	-1	-1	232655	5610	5507	0.9816399286987523	0.023670241344480022
L1MC2	L1MC2	5879	5879	3530	top50consensus	2546	6580.0	6127	20	2.630742808072134	3064865	1257585	1256780	0.9993598842225376	0.4100604757468926
MER2B	MER2B	1534	1534	892	ident_name	-	-	-1	-1	-1	258766	121630	121605	0.9997944586039629	0.46994195528006
MamTip2b	MamTip2b	7633	7633	130	ident_name	-	-	-1	-1	-1	1409404	4951	4951	1.0	0.003512832374535619
LTR81	LTR81	518	518	15	ident_name	-	-	-1	-1	-1	159045	947	947	1.0	0.005954289666446603
Tigger12	Tigger12	561	561	58	ident_name	-	-	-1	-1	-1	153447	3880	3880	1.0	0.025285603498276278
X6b_DNA	X6b_DNA	3865	3865	83	ident_name	-	-	-1	-1	-1	542786	3355	3355	1.0	0.006181073203804077
Eutr2B	Eutr2B	562	562	105	ident_name	-	-	-1	-1	-1	95163	6888	6842	0.993321718931475	0.0718976913296134
L1PB4	L1PB4	6783	6783	3692	top50consensus	3807	8292.0	8827	58	2.6380753138075312	3950948	1723708	1722287	0.9991756144312146	0.4359174051392223
L1MA5A	L1MA5A	3210	3210	1280	top50consensus	3213	5988.0	7736	78	2.923658352229781	1638608	548946	548505	0.9991966422926846	0.33473838770468595
LTR10B2	LTR10B2	125	125	92	ident_name	-	-	-1	-1	-1	41741	20592	20592	1.0	0.49332790302101054
LTR21C	LTR21C	22	22	22	ident_name	-	-	-1	-1	-1	9170	7379	7346	0.9955278493020735	0.8010905125408943
LTR62	LTR62	325	325	289	ident_name	-	-	-1	-1	-1	135263	98143	98143	1.0	0.7255716640914367
L1PA11	L1PA11	4147	4147	3954	top50consensus	5929	10456.0	9625	18	1.739562624254473	4082720	3480365	3475665	0.9986495669276068	0.851311135713446
MamRep434	MamRep434	4790	4790	245	ident_name	-	-	-1	-1	-1	972401	11712	11661	0.9956454918032787	0.011991966277286839
Charlie4a	Charlie4a	3371	3371	1796	ident_name	-	-	-1	-1	-1	845894	210722	210701	0.999900342631524	0.24908676500838167
MER34C2	MER34C2	562	562	403	ident_name	-	-	-1	-1	-1	171098	76825	76755	0.9990888382687927	0.4486025552607278
MER39	MER39	2820	2820	2065	ident_name	-	-	-1	-1	-1	970462	404925	404573	0.9991307032166451	0.41688700845576643
MLT1E2	MLT1E2	3734	3734	2471	ident_name	-	-	-1	-1	-1	1430126	365504	365443	0.9998331071616179	0.25553203004490516
Tigger23a	Tigger23a	929	929	50	ident_name	-	-	-1	-1	-1	198100	2805	2805	1.0	0.014159515396264514
Helitron3Na_Mam	Helitron3Na_Mam	1311	1311	189	ident_name	-	-	-1	-1	-1	288800	10963	10963	1.0	0.03796052631578947
LTR5B	LTR5B	501	501	456	ident_name	-	-	-1	-1	-1	359297	329677	329612	0.9998028373225915	0.9173803288087571
LTR45C	LTR45C	441	441	337	ident_name	-	-	-1	-1	-1	143499	90192	90158	0.9996230264324996	0.6282831239242085
MLT1L	MLT1L	14370	14370	1434	ident_name	-	-	-1	-1	-1	4030531	79410	79410	1.0	0.019702118653844865
Tigger3d	Tigger3d	763	763	257	ident_name	-	-	-1	-1	-1	91585	31868	31848	0.9993724111961843	0.34774253425779333
LTR8A	LTR8A	1407	1407	1208	ident_name	-	-	-1	-1	-1	634175	402900	402900	1.0	0.6353135964047779
MER4A	MER4A	1031	1031	964	ident_name	-	-	-1	-1	-1	443659	353651	353389	0.9992591566261654	0.7965329228078322
LTR38A1	LTR38A1	124	124	86	ident_name	-	-	-1	-1	-1	36759	22170	22170	1.0	0.6031176038521179
LTR38-int	LTR38-int	132	132	44	ident_name	-	-	-1	-1	-1	52887	12832	12812	0.9984413965087282	0.2422523493486112
HERVK13	HERVK13-int	65	65	59	ident_name(-int)	-	-	-1	-1	-1	85123	74143	74048	0.998718692256855	0.8698941531665942
LTR3B	LTR3B	298	298	287	ident_name	-	-	-1	-1	-1	107109	88173	88173	1.0	0.8232081337702714
MLT1E1	MLT1E1	1067	1067	613	ident_name	-	-	-1	-1	-1	349797	80167	80138	0.9996382551423902	0.22909859146876618
LTR78B	LTR78B	4701	4701	237	ident_name	-	-	-1	-1	-1	1586687	11248	11229	0.9983108108108109	0.0070770101475590335
L1MB1	L1MB1	5438	5438	2401	top50consensus	2910	5714.0	6638	39	2.9012237762237763	3028632	694636	694075	0.9991923827731358	0.22917112412468732
Tigger4a	Tigger4a	3829	3829	2940	ident_name	-	-	-1	-1	-1	664127	371484	367553	0.9894181176039883	0.5534378213805492
AluYi6	AluYi6	625	625	522	ident_name	-	-	-1	-1	-1	122598	98167	98167	1.0	0.8007226871563974
MER115	MER115	2908	2908	820	ident_name	-	-	-1	-1	-1	862274	63956	63956	1.0	0.0741713190934668
LTR3A	LTR3A	161	161	154	ident_name	-	-	-1	-1	-1	64469	54051	54051	1.0	0.8384029533574276
MLT1J1	MLT1J1	4558	4558	1053	ident_name	-	-	-1	-1	-1	1205525	70998	70998	1.0	0.05889384293150287
LTR33C	LTR33C	740	740	286	ident_name	-	-	-1	-1	-1	237664	26533	26533	1.0	0.11164080382388582
LTR85c	LTR85c	2127	2127	83	ident_name	-	-	-1	-1	-1	632628	3452	3452	1.0	0.005456603248670625
Kanga1a	Kanga1a	806	806	304	ident_name	-	-	-1	-1	-1	229566	29772	29737	0.9988243987639392	0.12953573264333568
LTR105_Mam	LTR105_Mam	781	781	113	ident_name	-	-	-1	-1	-1	238936	7052	7052	1.0	0.029514179529246325
MLT2B2	MLT2B2	2377	2377	1954	ident_name	-	-	-1	-1	-1	752784	421218	421078	0.9996676305381061	0.559360985355693
HAL1b	HAL1b	5660	5660	706	ident_name	-	-	-1	-1	-1	1615951	51815	51779	0.9993052204959953	0.032042431979682554
LTR40A1	LTR40A1	677	677	207	ident_name	-	-	-1	-1	-1	207527	16280	16280	1.0	0.07844762368270153
HERVL40	HERVL40-int	1478	1478	591	ident_name(-int)	-	-	-1	-1	-1	694574	122327	122300	0.9997792801262191	0.17607915067365032
LTR103_Mam	LTR103_Mam	1457	1457	72	ident_name	-	-	-1	-1	-1	377240	3064	3064	1.0	0.008122150355211537
MER85	MER85	911	911	893	ident_name	-	-	-1	-1	-1	112455	103742	103646	0.999074627441152	0.92166644435552
MER92B	MER92B	822	822	480	ident_name	-	-	-1	-1	-1	267523	81164	81145	0.9997659060667291	0.303319714566598
LTR10E	LTR10E	279	279	263	ident_name	-	-	-1	-1	-1	128232	93259	93214	0.9995174728444439	0.7269168382307069
MER63C	MER63C	964	964	664	ident_name	-	-	-1	-1	-1	387518	143048	142837	0.998524970639226	0.36859449109460724
L1PA13	L1PA13	8729	8729	2638	top50consensus	5287	7695.0	9009	53	2.0331753554502368	7589580	2699448	2697698	0.9993517193144672	0.3554476005259843
MamTip1b	MamTip1b	596	596	115	ident_name	-	-	-1	-1	-1	110442	6384	6384	1.0	0.05780409626772424
Kanga1b	Kanga1b	381	381	128	ident_name	-	-	-1	-1	-1	106857	12476	12476	1.0	0.11675416678364543
MER91C	MER91C	2649	2649	371	ident_name	-	-	-1	-1	-1	220642	12688	12658	0.9976355611601513	0.05736895060777186
Tigger20a	Tigger20a	2028	2028	186	ident_name	-	-	-1	-1	-1	549851	11200	11200	1.0	0.020369154552778844
MLT1F1	MLT1F1	2913	2913	1891	ident_name	-	-	-1	-1	-1	947494	307476	307398	0.9997463216641299	0.3244326613150057
L4_B_Mam	L4_B_Mam	4340	4340	244	ident_name	-	-	-1	-1	-1	1224886	11429	11429	1.0	0.009330664241406956
MamRep4096	MamRep4096	1594	1594	256	ident_name	-	-	-1	-1	-1	274424	14732	14701	0.9978957371707847	0.05357038742967087
L1ME5	L1ME5	3709	3709	390	top50consensus	1573	3952.0	3678	30	2.831408775981524	1392361	27996	27996	1.0	0.02010685447236744
Ricksha_c	Ricksha_c	2136	2136	865	ident_name	-	-	-1	-1	-1	433537	176770	175815	0.9945974995757199	0.40553632100605025
LTR85a	LTR85a	3154	3154	211	ident_name	-	-	-1	-1	-1	897233	9706	9706	1.0	0.010817702870937649
LTR24C	LTR24C	355	355	310	ident_name	-	-	-1	-1	-1	120083	90886	90859	0.9997029245428338	0.7566349941290608
L1MA1	L1MA1	4411	4411	2012	top50consensus	6048	7700.0	10257	106	1.850108225108225	3700393	2076296	2074732	0.9992467355328912	0.5606788251950536
MSTC	MSTC	2830	2830	2515	ident_name	-	-	-1	-1	-1	818525	574281	573844	0.9992390484797512	0.7010708286246602
MamRep38	MamRep38	2504	2504	326	ident_name	-	-	-1	-1	-1	470750	14787	14787	1.0	0.03141157727031333
LTR1B1	LTR1B1	239	239	168	ident_name	-	-	-1	-1	-1	123136	84333	84333	1.0	0.6848768840956341
AluYb8	AluYb8	2937	2937	2765	ident_name	-	-	-1	-1	-1	804029	776177	776176	0.9999987116340732	0.9653582146912612
MER21A	MER21A	1947	1947	1579	ident_name	-	-	-1	-1	-1	739677	438528	438400	0.9997081144191476	0.5926911341031288
X6a_DNA	X6a_DNA	1877	1877	108	ident_name	-	-	-1	-1	-1	331267	5268	5268	1.0	0.015902580094002722
MSTB2	MSTB2	1670	1670	1423	ident_name	-	-	-1	-1	-1	558035	275094	275063	0.9998873112463376	0.49291352692931445
HERVK11	HERVK11-int	267	267	262	ident_name(-int)	-	-	-1	-1	-1	385156	374373	374363	0.9999732886719929	0.9719775883018829
MER48	MER48	216	216	209	ident_name	-	-	-1	-1	-1	70298	64910	64910	1.0	0.923354860735725
MLT2A2	MLT2A2	1946	1946	1829	ident_name	-	-	-1	-1	-1	688316	587739	587559	0.9996937416097962	0.8536181056375269
HERVH	HERVH-int	5610	5610	5515	ident_name(-int)	-	-	-1	-1	-1	5423795	5079517	5062972	0.9967428005457999	0.9334740711992249
L1PA17	L1PA17	4959	4959	2846	top50consensus	4061	6686.0	9503	49	2.684463276836158	3260216	1366355	1365548	0.9994093775043821	0.41885200244400983
LTR53B	LTR53B	198	198	164	ident_name	-	-	-1	-1	-1	77813	32772	32756	0.9995117783473697	0.4209579376196779
Charlie13b	Charlie13b	541	541	91	ident_name	-	-	-1	-1	-1	122938	5933	5933	1.0	0.04826009858627926
MER61B	MER61B	432	432	413	ident_name	-	-	-1	-1	-1	144138	98737	98737	1.0	0.6850171363554372
tRNA-Leu-TTA	tRNA-Leu-TTA	13	13	8	ident_name	-	-	-1	-1	-1	858	511	511	1.0	0.5955710955710956
LTR16	LTR16	3389	3389	887	ident_name	-	-	-1	-1	-1	1009371	64776	64776	1.0	0.06417461963935957
LOR1a	LOR1a	836	836	768	ident_name	-	-	-1	-1	-1	304304	239004	238921	0.9996527254773979	0.7851392029023608
MER57B1	MER57B1	930	930	843	ident_name	-	-	-1	-1	-1	283412	244833	244761	0.9997059219958094	0.8636225706744951
AluYh7	AluYh7	786	786	588	ident_name	-	-	-1	-1	-1	116273	86700	86700	1.0	0.7456589233958013
LTR16A2	LTR16A2	2173	2173	561	ident_name	-	-	-1	-1	-1	638947	45249	45249	1.0	0.07081808037286348
LTR53	LTR53	507	507	391	ident_name	-	-	-1	-1	-1	184687	81921	81921	1.0	0.443566683090851
MER92A	MER92A	157	157	96	ident_name	-	-	-1	-1	-1	43342	10301	10301	1.0	0.23766785104517557
MER90	MER90	1156	1156	491	ident_name	-	-	-1	-1	-1	362926	67269	67269	1.0	0.18535183480929998
MER90a	MER90a	855	855	584	ident_name	-	-	-1	-1	-1	288915	102835	102835	1.0	0.35593513663188137
LTR1A2	LTR1A2	928	928	883	ident_name	-	-	-1	-1	-1	569141	444981	444517	0.9989572588492542	0.781031414008128
LTR89B	LTR89B	1157	1157	65	ident_name	-	-	-1	-1	-1	311378	3808	3808	1.0	0.012229508828497838
MER11A	MER11A	509	509	500	ident_name	-	-	-1	-1	-1	380307	359293	358441	0.9976286763171005	0.9425043451737675
LTR81AB	LTR81AB	319	319	33	ident_name	-	-	-1	-1	-1	81687	1703	1703	1.0	0.020847870530194525
L1PA8	L1PA8	7411	7411	7204	top50consensus	6423	7211.0	7798	10	1.2035807995060965	6309823	5961977	5955060	0.9988398143770095	0.943776077395515
L1MEi	L1MEi	7670	7670	1	top50consensus	1523	3201.0	2412	44	1.9037095501183898	2884107	24	24	1.0	8.321466575269225e-06
MER61D	MER61D	275	275	253	ident_name	-	-	-1	-1	-1	102202	71503	71503	1.0	0.6996242734975833
MER61A	MER61A	798	798	773	ident_name	-	-	-1	-1	-1	241782	176115	176088	0.9998466910825313	0.7282924287167779
Arthur1	Arthur1	1558	1558	822	ident_name	-	-	-1	-1	-1	574249	117024	117024	1.0	0.20378616244869385
LTR8	LTR8	3070	3070	2862	ident_name	-	-	-1	-1	-1	1437287	1089646	1089527	0.999890790219943	0.7580441484546928
Eutr15	Eutr15	758	758	109	ident_name	-	-	-1	-1	-1	219843	6301	6301	1.0	0.028661362881692843
L1MA6	L1MA6	4723	4723	2513	top50consensus	3479	7441.0	8456	37	2.824315297261189	2922816	1195864	1194716	0.999040024618184	0.4087551183516171
ORSL-2a	ORSL-2a	536	536	84	ident_name	-	-	-1	-1	-1	107046	4949	4949	1.0	0.04623246081124003
L1PB2	L1PB2	3917	3917	1416	top50consensus	5576	7691.0	10465	86	2.3025302530253025	3159388	1383728	1383045	0.9995064058832371	0.43775724918876696
EUTREP8	EUTREP8	424	424	21	ident_name	-	-	-1	-1	-1	95618	1072	1072	1.0	0.011211278211215462
X7A_LINE	X7A_LINE	852	852	44	ident_name	-	-	-1	-1	-1	148838	2009	2009	1.0	0.013497897042421962
MamTip1	MamTip1	1034	1034	127	ident_name	-	-	-1	-1	-1	171956	5874	5874	1.0	0.034159901370117936
Tigger3c	Tigger3c	1118	1118	805	ident_name	-	-	-1	-1	-1	294193	172649	172572	0.999554008421711	0.5865945144853888
LTR101_Mam	LTR101_Mam	1608	1608	109	ident_name	-	-	-1	-1	-1	547050	6140	6140	1.0	0.011223836943606617
Tigger11a	Tigger11a	495	495	67	ident_name	-	-	-1	-1	-1	132962	4801	4801	1.0	0.03610806094974504
MER110	MER110	784	784	264	ident_name	-	-	-1	-1	-1	228605	26316	26316	1.0	0.11511559239736664
L1PA8A	L1PA8A	2516	2516	2289	top50consensus	6417	6998.0	7768	11	1.2077114427860696	3174571	2935139	2933641	0.9994896323479059	0.9241062808171561
MLT1N2	MLT1N2	9523	9523	755	ident_name	-	-	-1	-1	-1	2277277	35120	35120	1.0	0.01542192715247201
Plat_L3	Plat_L3	2849	2849	104	ident_name	-	-	-1	-1	-1	672381	5926	5926	1.0	0.00881345546646916
MamRep137	MamRep137	2913	2913	298	ident_name	-	-	-1	-1	-1	662089	17031	17031	1.0	0.025723127857433064
LTR66	LTR66	339	339	331	ident_name	-	-	-1	-1	-1	106057	96639	96558	0.9991618290752181	0.9104349547884628
HERVL66	HERVL66-int	137	137	132	ident_name(-int)	-	-	-1	-1	-1	96694	90330	90330	1.0	0.9341841272467785
MER54B	MER54B	414	414	342	ident_name	-	-	-1	-1	-1	172265	105969	105969	1.0	0.6151510753780512
BLACKJACK	BLACKJACK	1827	1827	850	ident_name	-	-	-1	-1	-1	836524	147560	147516	0.9997018162103551	0.1763440140390473
MER70A	MER70A	560	560	502	ident_name	-	-	-1	-1	-1	194096	108735	108735	1.0	0.5602124721787157
L1ME3F	L1ME3F	4347	4347	89	top50consensus	1744	3664.0	3464	43	2.7756410256410255	1677112	4569	4569	1.0	0.0027243261034444926
MamRep564	MamRep564	1328	1328	137	ident_name	-	-	-1	-1	-1	218716	7093	7093	1.0	0.032430183434225206
L1MD1	L1MD1	6057	6057	3340	top50consensus	2997	5904.0	7477	21	2.6876347951114306	3646395	1133223	1132214	0.9991096192011634	0.3105022906185424
MamGypsy2-I	MamGypsy2-I	2713	2713	226	ident_name	-	-	-1	-1	-1	921056	14437	14437	1.0	0.015674399819337805
LTR90B	LTR90B	819	819	49	ident_name	-	-	-1	-1	-1	186354	2393	2393	1.0	0.012841151786385053
Tigger19b	Tigger19b	2101	2101	104	ident_name	-	-	-1	-1	-1	479574	5261	5261	1.0	0.010970152677167652
MER20B	MER20B	4431	4431	1079	ident_name	-	-	-1	-1	-1	1121486	90293	90293	1.0	0.08051192792420057
X24_DNA	X24_DNA	979	979	96	ident_name	-	-	-1	-1	-1	113742	3866	3789	0.980082772891878	0.03331223294825131
LTR16D	LTR16D	1364	1364	163	ident_name	-	-	-1	-1	-1	426654	9209	9209	1.0	0.02158423453196267
MLT1G	MLT1G	2521	2521	991	ident_name	-	-	-1	-1	-1	860458	100957	100957	1.0	0.11732937575105351
LTR24	LTR24	298	298	255	ident_name	-	-	-1	-1	-1	89996	62504	62504	1.0	0.6945197564336193
LTR24B	LTR24B	463	463	332	ident_name	-	-	-1	-1	-1	144202	65563	65563	1.0	0.4546608230121635
MER57A1	MER57A1	1024	1024	994	ident_name	-	-	-1	-1	-1	367191	328776	328750	0.9999209188018591	0.8953106149115855
LTR10C	LTR10C	497	497	475	ident_name	-	-	-1	-1	-1	229127	215808	215789	0.9999119587781732	0.94178774216919
X20_LINE	X20_LINE	192	192	14	ident_name	-	-	-1	-1	-1	33383	815	815	1.0	0.024413623700685977
MADE1	MADE1	7373	7373	6650	ident_name	-	-	-1	-1	-1	470096	378410	375810	0.9931291456356861	0.7994324563493415
MLT2A1	MLT2A1	3663	3663	3324	ident_name	-	-	-1	-1	-1	1108521	970391	969499	0.9990807829009132	0.8745878517411939
LTR48B	LTR48B	1113	1113	747	ident_name	-	-	-1	-1	-1	427631	143936	143936	1.0	0.33658925569006926
MER57A-int	MER57A-int	1840	1840	1110	ident_name	-	-	-1	-1	-1	1009607	513951	513462	0.9990485474296188	0.5085761093177841
tRNA-Glu-GAA	tRNA-Glu-GAA	588	588	40	ident_name	-	-	-1	-1	-1	37704	2053	2053	1.0	0.05445045618502016
MER70B	MER70B	492	492	361	ident_name	-	-	-1	-1	-1	159377	58855	58855	1.0	0.36928164038725786
MamGypLTR1b	MamGypLTR1b	1957	1957	157	ident_name	-	-	-1	-1	-1	609154	7406	7406	1.0	0.012157845142607617
UCON25	UCON25	69	69	7	ident_name	-	-	-1	-1	-1	9719	260	260	1.0	0.02675172342833625
MER121B	MER121B	84	84	21	ident_name	-	-	-1	-1	-1	16936	1190	1190	1.0	0.07026452527161077
LFSINE_Vert	LFSINE_Vert	1166	1166	73	ident_name	-	-	-1	-1	-1	207624	4620	4620	1.0	0.02225176280198821
Tigger9b	Tigger9b	778	778	500	ident_name	-	-	-1	-1	-1	238029	91830	91830	1.0	0.3857933277037672
AmnL2-1	AmnL2-1	265	265	14	ident_name	-	-	-1	-1	-1	53212	785	785	1.0	0.014752311508682251
Kanga2_a	Kanga2_a	1565	1565	480	ident_name	-	-	-1	-1	-1	470995	41238	41238	1.0	0.08755506958672597
LTR1E	LTR1E	332	332	263	ident_name	-	-	-1	-1	-1	194461	125878	125739	0.9988957562083922	0.6466026606877472
MamTip2	MamTip2	5123	5123	161	ident_name	-	-	-1	-1	-1	764624	5711	5711	1.0	0.007469030530038293
L1MEj	L1MEj	2969	2969	2	top50consensus	1682	3081.0	2772	53	2.2	1215338	63	63	1.0	5.183743123312198e-05
L1PB3	L1PB3	3460	3460	1927	top50consensus	4944	7708.0	9742	33	2.4719614311088556	2707869	1362054	1361398	0.999518374455051	0.5027562263905676
LTR23	LTR23	809	809	670	ident_name	-	-	-1	-1	-1	173499	112523	112451	0.9993601308176995	0.6481363004974092
LTR23-int	LTR23-int	307	307	185	ident_name	-	-	-1	-1	-1	128464	48173	48173	1.0	0.37499221571802216
MER34B	MER34B	506	506	401	ident_name	-	-	-1	-1	-1	179036	109234	109234	1.0	0.6101231037333273
X9a_DNA	X9a_DNA	1350	1350	64	ident_name	-	-	-1	-1	-1	268941	4069	4045	0.994101744900467	0.015040473561115635
LTR54	LTR54	901	901	718	ident_name	-	-	-1	-1	-1	255100	154018	153995	0.9998506668051786	0.6036652293218345
L1M6	L1M6	10718	10718	1	top50consensus	1463	3469.0	2465	48	1.989507667473769	3959903	26	26	1.0	6.5658173950220495e-06
Tigger9a	Tigger9a	1097	1097	274	ident_name	-	-	-1	-1	-1	231441	22174	22174	1.0	0.09580843497910915
L4_C_Mam	L4_C_Mam	7190	7190	413	ident_name	-	-	-1	-1	-1	2107347	19462	19426	0.9981502414962491	0.009218225569875298
Chap1a_Mam	Chap1a_Mam	1027	1027	80	ident_name	-	-	-1	-1	-1	202102	4405	4405	1.0	0.02179592483003632
MamRep1879	MamRep1879	2184	2184	196	ident_name	-	-	-1	-1	-1	308653	9141	9141	1.0	0.02961578212426252
X12_DNA	X12_DNA	4045	4045	168	ident_name	-	-	-1	-1	-1	719514	7188	7188	1.0	0.009990076635062
LTR16B2	LTR16B2	1557	1557	424	ident_name	-	-	-1	-1	-1	475574	36200	36200	1.0	0.07611854306585306
X5a_DNA	X5a_DNA	1173	1173	43	ident_name	-	-	-1	-1	-1	140411	1607	1607	1.0	0.011444972260008119
MER94B	MER94B	1835	1835	75	ident_name	-	-	-1	-1	-1	167866	2870	2870	1.0	0.017096970202423362
Zaphod3	Zaphod3	662	662	303	ident_name	-	-	-1	-1	-1	154851	35871	35871	1.0	0.23164848790127285
MER58D	MER58D	612	612	332	ident_name	-	-	-1	-1	-1	112901	37128	37128	1.0	0.3288544831312389
LTR29	LTR29	609	609	482	ident_name	-	-	-1	-1	-1	203934	111024	111007	0.9998468799538839	0.5443280669236126
MER41A	MER41A	2483	2483	2378	ident_name	-	-	-1	-1	-1	958735	910498	910471	0.9999703458986181	0.9496586648030999
LTR81B	LTR81B	1520	1520	136	ident_name	-	-	-1	-1	-1	492204	6932	6932	1.0	0.014083591356429448
LTR8B	LTR8B	1688	1688	1436	ident_name	-	-	-1	-1	-1	784408	469842	469740	0.9997829057427816	0.5988465186484585
MER5C	MER5C	1436	1436	619	ident_name	-	-	-1	-1	-1	281208	45614	45614	1.0	0.16220733407299934
UCON63	UCON63	16	16	6	ident_name	-	-	-1	-1	-1	1989	394	394	1.0	0.19808949220713926
MER2	MER2	9076	9076	7207	ident_name	-	-	-1	-1	-1	2162236	1122891	1122714	0.9998423711651443	0.5192374930396128
MER4E	MER4E	740	740	644	ident_name	-	-	-1	-1	-1	310184	261080	261065	0.9999425463459476	0.8416456038996208
MLT1F	MLT1F	4534	4534	2900	ident_name	-	-	-1	-1	-1	1517172	424039	423836	0.9995212704491804	0.2793592288811025
Tigger13a	Tigger13a	3254	3254	800	ident_name	-	-	-1	-1	-1	1033884	60494	60494	1.0	0.05851139973149792
LTR16D2	LTR16D2	291	291	59	ident_name	-	-	-1	-1	-1	89211	3925	3925	1.0	0.04399681653607739
ORSL	ORSL	1235	1235	606	ident_name	-	-	-1	-1	-1	211628	49503	49503	1.0	0.23391517190541894
MLT1G1	MLT1G1	3892	3892	1558	ident_name	-	-	-1	-1	-1	1398304	134533	134507	0.9998067388670437	0.0961929594709019
LTR84b	LTR84b	1565	1565	147	ident_name	-	-	-1	-1	-1	484022	8114	8114	1.0	0.016763700823516286
LTR1C	LTR1C	79	79	59	ident_name	-	-	-1	-1	-1	39524	32466	32466	1.0	0.8214249569881591
LTR5A	LTR5A	336	336	313	ident_name	-	-	-1	-1	-1	298834	292768	292760	0.9999726746092469	0.9796743342457686
LTR91	LTR91	2196	2196	120	ident_name	-	-	-1	-1	-1	632758	5704	5704	1.0	0.009014504755372512
MER125	MER125	254	254	32	ident_name	-	-	-1	-1	-1	31357	1881	1881	1.0	0.05998660586153012
LTR91A	LTR91A	4199	4199	134	ident_name	-	-	-1	-1	-1	1272620	6114	6114	1.0	0.004804262073517625
Eulor2C	Eulor2C	78	78	4	ident_name	-	-	-1	-1	-1	9102	189	189	1.0	0.02076466710613052
L1P1	L1P1	3277	3277	2504	top50consensus	5149	5824.0	5987	4	1.2270957163353147	3083213	2619934	2617753	0.9991675362814483	0.8490341082500625
LTR40a	LTR40a	1980	1980	1277	ident_name	-	-	-1	-1	-1	690913	155959	155930	0.999814053693599	0.22568688098212075
LTR85b	LTR85b	1649	1649	88	ident_name	-	-	-1	-1	-1	494313	4319	4319	1.0	0.00873737894815633
MER34B-int	MER34B-int	1148	1148	398	ident_name	-	-	-1	-1	-1	364799	97515	97411	0.9989334974106547	0.2670264995243956
MER105	MER105	728	728	390	ident_name	-	-	-1	-1	-1	110423	31851	31730	0.9962010611911714	0.2873495557990636
LTR19B	LTR19B	292	292	278	ident_name	-	-	-1	-1	-1	120673	110529	110529	1.0	0.9159381137454111
Charlie16a	Charlie16a	3757	3757	282	ident_name	-	-	-1	-1	-1	697219	13754	13754	1.0	0.01972694375798709
FordPrefect_a	FordPrefect_a	307	307	66	ident_name	-	-	-1	-1	-1	73790	4596	4596	1.0	0.06228486244748611
MER11C	MER11C	964	964	956	ident_name	-	-	-1	-1	-1	951047	849552	849372	0.9997881236228036	0.8930915086215507
Charlie8	Charlie8	2394	2394	425	ident_name	-	-	-1	-1	-1	672846	38050	38050	1.0	0.05655083035345384
LTR71B	LTR71B	216	216	209	ident_name	-	-	-1	-1	-1	93614	80848	80848	1.0	0.8636315081077617
AmnHarb1	AmnHarb1	194	194	20	ident_name	-	-	-1	-1	-1	48730	1510	1510	1.0	0.030987071619125794
LTR16D1	LTR16D1	171	171	48	ident_name	-	-	-1	-1	-1	57523	3019	3019	1.0	0.05248335448429324
L1M1	L1M1	9612	9612	5388	top50consensus	4656	7183.0	10064	60	2.2810516772438802	8793353	4201843	4185483	0.9961064704226217	0.4759825973095815
MamSINE1	MamSINE1	6570	6570	75	ident_name	-	-	-1	-1	-1	1031290	2896	2896	1.0	0.0028081335027005014
Charlie18a	Charlie18a	3589	3589	518	ident_name	-	-	-1	-1	-1	663978	27373	27336	0.9986483030723706	0.04117003876634467
MER51E	MER51E	200	200	185	ident_name	-	-	-1	-1	-1	63333	47447	46603	0.9822117309840454	0.7358407149511313
LTR86A1	LTR86A1	578	578	80	ident_name	-	-	-1	-1	-1	164182	5142	5142	1.0	0.03131890219390676
MER44A	MER44A	2508	2508	2082	ident_name	-	-	-1	-1	-1	588895	355219	355107	0.9996847015503112	0.603005629186867
U2	U2	799	799	630	ident_name	-	-	-1	-1	-1	42194	29165	29165	1.0	0.6912120206664455
LTR83	LTR83	747	747	150	ident_name	-	-	-1	-1	-1	226645	10614	10614	1.0	0.04683094707582342
LTR75_1	LTR75_1	134	134	95	ident_name	-	-	-1	-1	-1	43113	19696	19696	1.0	0.4568459629346137
MER72	MER72	779	779	672	ident_name	-	-	-1	-1	-1	331362	217649	217615	0.9998437851770511	0.6567288946831562
LTR2	LTR2	931	931	901	ident_name	-	-	-1	-1	-1	373211	332281	332249	0.9999036959681715	0.8902443925822122
Cheshire	Cheshire	880	880	574	ident_name	-	-	-1	-1	-1	369809	176979	176908	0.9995988224591619	0.4783766755270964
Helitron2Na_Mam	Helitron2Na_Mam	809	809	42	ident_name	-	-	-1	-1	-1	134478	1711	1711	1.0	0.012723270720861405
LTR47B4	LTR47B4	110	110	94	ident_name	-	-	-1	-1	-1	35772	27215	27215	1.0	0.760790562451079
MER51C	MER51C	503	503	426	ident_name	-	-	-1	-1	-1	211691	83383	83061	0.9961383015722629	0.3923690662333307
UCON88	UCON88	113	113	7	ident_name	-	-	-1	-1	-1	12989	307	307	1.0	0.0236353837862807
Charlie32a	Charlie32a	597	597	41	ident_name	-	-	-1	-1	-1	91368	1947	1947	1.0	0.021309429997373258
X7C_LINE	X7C_LINE	403	403	26	ident_name	-	-	-1	-1	-1	61915	1784	1784	1.0	0.028813696196398286
X17_LINE	X17_LINE	740	740	44	ident_name	-	-	-1	-1	-1	119009	2005	2005	1.0	0.01684746531774908
SVA_D	SVA_D	1220	1220	1137	ident_name	-	-	-1	-1	-1	1165877	1126022	805057	0.7149567237585056	0.6905162379908001
SSU-rRNA_Hsa	SSU-rRNA_Hsa	83	83	39	ident_name	-	-	-1	-1	-1	39480	30991	30991	1.0	0.7849797365754813
MER52D	MER52D	918	918	612	ident_name	-	-	-1	-1	-1	806748	399309	391223	0.9797500181563651	0.48493829547764605
Arthur1C	Arthur1C	490	490	229	ident_name	-	-	-1	-1	-1	93843	22488	22488	1.0	0.23963428279147087
LTR84a	LTR84a	733	733	57	ident_name	-	-	-1	-1	-1	224360	3466	3444	0.9936526255049047	0.015350329827063648
MLT2C2	MLT2C2	1493	1493	1065	ident_name	-	-	-1	-1	-1	373337	190191	189907	0.9985067642527775	0.508674468375757
LTR21B	LTR21B	34	34	34	ident_name	-	-	-1	-1	-1	12227	8390	8343	0.9943980929678188	0.6823423570785966
HERVFH21	HERVFH21-int	299	299	155	ident_name(-int)	-	-	-1	-1	-1	330779	100878	100878	1.0	0.30497099271719186
LTR14A	LTR14A	134	134	130	ident_name	-	-	-1	-1	-1	42754	38826	38826	1.0	0.9081255555035787
UCON34	UCON34	885	885	69	ident_name	-	-	-1	-1	-1	125684	3067	3067	1.0	0.02440246968587887
MER101	MER101	349	349	306	ident_name	-	-	-1	-1	-1	106060	67724	67610	0.9983166971826827	0.6374693569677541
UCON4	UCON4	206	206	32	ident_name	-	-	-1	-1	-1	42798	1690	1690	1.0	0.039487826533950186
LTR36	LTR36	448	448	370	ident_name	-	-	-1	-1	-1	171638	87983	87939	0.9994999033904277	0.5123515771565738
MER126	MER126	427	427	83	ident_name	-	-	-1	-1	-1	82629	4883	4814	0.9858693426172435	0.058260417044863184
MER130	MER130	208	208	17	ident_name	-	-	-1	-1	-1	52058	1132	1132	1.0	0.021744976756694456
UCON22	UCON22	54	54	3	ident_name	-	-	-1	-1	-1	7508	118	118	1.0	0.015716568993074054
LTR71A	LTR71A	166	166	160	ident_name	-	-	-1	-1	-1	63369	59119	59119	1.0	0.9329325064305891
U13	U13	482	482	318	ident_name	-	-	-1	-1	-1	47977	25009	25009	1.0	0.5212706088333994
UCON73	UCON73	584	584	20	ident_name	-	-	-1	-1	-1	71687	859	859	1.0	0.01198264678393572
Tigger14a	Tigger14a	2686	2686	186	ident_name	-	-	-1	-1	-1	428431	8231	8231	1.0	0.01921196178614526
X24_LINE	X24_LINE	314	314	22	ident_name	-	-	-1	-1	-1	49889	987	987	1.0	0.01978392030307282
Charlie7a	Charlie7a	2726	2726	358	ident_name	-	-	-1	-1	-1	432283	17655	17616	0.9977909940526763	0.04075108204578945
Charlie29a	Charlie29a	1752	1752	322	ident_name	-	-	-1	-1	-1	487512	24407	24407	1.0	0.05006440867096605
Charlie17a	Charlie17a	2169	2169	162	ident_name	-	-	-1	-1	-1	322608	7311	7311	1.0	0.022662178247284632
Eulor2A	Eulor2A	109	109	13	ident_name	-	-	-1	-1	-1	18459	650	650	1.0	0.03521317514491576
MamGypLTR1d	MamGypLTR1d	1177	1177	78	ident_name	-	-	-1	-1	-1	407185	3513	3513	1.0	0.00862752802780063
X9_LINE	X9_LINE	64	64	13	ident_name	-	-	-1	-1	-1	17166	821	821	1.0	0.047827100081556564
X2_LINE	X2_LINE	224	224	26	ident_name	-	-	-1	-1	-1	51876	1755	1755	1.0	0.03383067314365024
UCON20	UCON20	45	45	16	ident_name	-	-	-1	-1	-1	12713	1488	1488	1.0	0.1170455439314088
MARE4	MARE4	498	498	38	ident_name	-	-	-1	-1	-1	55591	1402	1402	1.0	0.025219909697612924
HERVIP10F	HERVIP10F-int	364	364	295	ident_name(-int)	-	-	-1	-1	-1	537543	379742	379495	0.9993495583843768	0.705980730843858
LTR86A2	LTR86A2	324	324	58	ident_name	-	-	-1	-1	-1	87699	3472	3472	1.0	0.03958996111700248
X5B_LINE	X5B_LINE	17	17	1	ident_name	-	-	-1	-1	-1	1616	32	32	1.0	0.019801980198019802
UCON8	UCON8	271	271	24	ident_name	-	-	-1	-1	-1	68039	1786	1786	1.0	0.02624965093549288
U1	U1	172	172	157	ident_name	-	-	-1	-1	-1	24559	18129	18129	1.0	0.7381815220489434
Mam_R4	Mam_R4	846	846	41	ident_name	-	-	-1	-1	-1	236097	2496	2496	1.0	0.010571925945691812
L2-1_AMi	L2-1_AMi	187	187	0	ident_name	-	-	-1	-1	-1	37853	None	None	None	-1
CR1-16_AMi	CR1-16_AMi	554	554	62	ident_name	-	-	-1	-1	-1	156165	3640	3640	1.0	0.0233086799218775
MER96B	MER96B	2371	2371	1358	ident_name	-	-	-1	-1	-1	369322	126521	122228	0.9660688739418752	0.33095239384602054
MER131	MER131	946	946	59	ident_name	-	-	-1	-1	-1	126404	3064	3064	1.0	0.02423973924875795
AluYk11	AluYk11	398	398	349	ident_name	-	-	-1	-1	-1	97188	66752	66748	0.9999400767018217	0.6867926081409228
LTR1A1	LTR1A1	351	351	320	ident_name	-	-	-1	-1	-1	209493	164868	164798	0.9995754179100856	0.7866515826304459
LTR5	LTR5	67	67	40	ident_name	-	-	-1	-1	-1	12317	9266	9239	0.9970861213036909	0.7501014857514005
LTR1F	LTR1F	165	165	134	ident_name	-	-	-1	-1	-1	89553	69165	69165	1.0	0.7723359351445512
UCON57	UCON57	40	40	3	ident_name	-	-	-1	-1	-1	2905	122	122	1.0	0.04199655765920826
MamGypLTR1a	MamGypLTR1a	1235	1235	123	ident_name	-	-	-1	-1	-1	409133	5692	5692	1.0	0.013912346351919791
MER75B	MER75B	103	103	96	ident_name	-	-	-1	-1	-1	18235	16322	16249	0.9955275088837152	0.891088565944612
L1M2b	L1M2b	397	397	149	top50consensus	2461	2865.0	4282	20	3.8062222222222224	246277	39974	39823	0.9962225446540252	0.16170003695026333
Tigger3b	Tigger3b	5158	5158	4566	ident_name	-	-	-1	-1	-1	2711830	2064686	2063787	0.9995645827016796	0.7610311118322314
Tigger3	Tigger3	2537	2537	2269	ident_name	-	-	-1	-1	-1	949969	712713	712360	0.9995047094693095	0.7498771012527777
Zaphod	Zaphod	1943	1943	919	ident_name	-	-	-1	-1	-1	677158	130526	130443	0.9993641113647855	0.19263303394481052
MER84	MER84	348	348	308	ident_name	-	-	-1	-1	-1	99084	79547	79547	1.0	0.8028238666182229
MER84-int	MER84-int	115	115	88	ident_name	-	-	-1	-1	-1	87478	66281	66254	0.9995926434423138	0.7573789981481058
HY1	HY1	451	451	391	ident_name	-	-	-1	-1	-1	45555	35626	35626	1.0	0.7820436834595544
UCON55	UCON55	1297	1297	14	ident_name	-	-	-1	-1	-1	158905	520	520	1.0	0.0032723954564047703
MARE8	MARE8	373	373	38	ident_name	-	-	-1	-1	-1	50166	1796	1796	1.0	0.0358011402144879
L1MA3	L1MA3	7197	7197	2477	top50consensus	5523	7715.0	11641	154	2.6083352005377547	7426085	2352704	2350500	0.9990632055711216	0.316519404235206
Charlie10	Charlie10	839	839	357	ident_name	-	-	-1	-1	-1	288065	61784	61760	0.9996115499158358	0.21439605644559387
LTR9D	LTR9D	713	713	639	ident_name	-	-	-1	-1	-1	316770	247363	247363	1.0	0.7808914985636266
Charlie26a	Charlie26a	606	606	129	ident_name	-	-	-1	-1	-1	105208	7629	7629	1.0	0.07251349707246597
MER50B	MER50B	769	769	703	ident_name	-	-	-1	-1	-1	350536	261269	261269	1.0	0.7453414199968049
Charlie21a	Charlie21a	839	839	196	ident_name	-	-	-1	-1	-1	263613	16456	16456	1.0	0.06242484247741955
MamGypLTR2c	MamGypLTR2c	1693	1693	75	ident_name	-	-	-1	-1	-1	638708	3607	3607	1.0	0.005647338063716127
EuthAT-2	EuthAT-2	1149	1149	475	ident_name	-	-	-1	-1	-1	384909	62723	62723	1.0	0.16295539984775623
X7B_LINE	X7B_LINE	934	934	28	ident_name	-	-	-1	-1	-1	138398	1208	1208	1.0	0.008728449833090074
LTR48	LTR48	802	802	635	ident_name	-	-	-1	-1	-1	336654	141349	141323	0.9998160581256323	0.4197870810981007
LTR86C	LTR86C	298	298	62	ident_name	-	-	-1	-1	-1	93801	3806	3806	1.0	0.04057526039168026
U5	U5	159	159	117	ident_name	-	-	-1	-1	-1	9527	5979	5979	1.0	0.6275847591056996
L1M	L1M	495	495	39	top50consensus	263	446.0	380	4	2.533333333333333	48171	1813	1813	1.0	0.03763675240289801
AmnSINE1	AmnSINE1	1372	1372	87	ident_name	-	-	-1	-1	-1	234125	4722	4722	1.0	0.02016871329418046
Charlie4	Charlie4	286	286	113	ident_name	-	-	-1	-1	-1	71369	15339	15339	1.0	0.21492524765654555
MER5C1	MER5C1	976	976	293	ident_name	-	-	-1	-1	-1	161178	16036	16036	1.0	0.09949248656764571
Charlie23a	Charlie23a	2269	2269	183	ident_name	-	-	-1	-1	-1	408785	8505	8505	1.0	0.02080555793387722
Charlie17	Charlie17	335	335	121	ident_name	-	-	-1	-1	-1	125857	17307	17299	0.9995377592881493	0.13744964523228745
L1MCb	L1MCb	2446	2446	1185	top50consensus	2116	3704.0	5107	22	2.780076211213936	1440750	324371	324043	0.9989888121934452	0.22491271906992885
Eutr18	Eutr18	1495	1495	50	ident_name	-	-	-1	-1	-1	363726	2308	2308	1.0	0.006345435850062959
X32_DNA	X32_DNA	477	477	65	ident_name	-	-	-1	-1	-1	95780	3778	3762	0.995764955002647	0.03927751096262268
MER127	MER127	348	348	53	ident_name	-	-	-1	-1	-1	68477	3016	2994	0.9927055702917772	0.04372270981497437
MamGypLTR4	MamGypLTR4	1219	1219	66	ident_name	-	-	-1	-1	-1	332800	4145	4145	1.0	0.012454927884615385
MER106B	MER106B	380	380	220	ident_name	-	-	-1	-1	-1	87581	31145	31145	1.0	0.35561366049713977
MER51B	MER51B	708	708	687	ident_name	-	-	-1	-1	-1	222472	182160	181602	0.9969367588932806	0.8162914883670754
HERV9	HERV9-int	348	348	338	ident_name(-int)	-	-	-1	-1	-1	830724	791734	791032	0.9991133385707827	0.9522199912365599
MER34A1	MER34A1	850	850	593	ident_name	-	-	-1	-1	-1	274566	106875	106875	1.0	0.3892506719695811
LTR47A	LTR47A	676	676	606	ident_name	-	-	-1	-1	-1	201103	135087	134990	0.9992819442285342	0.6712480669109859
MER9a3	MER9a3	559	559	548	ident_name	-	-	-1	-1	-1	257703	246651	246620	0.9998743163417136	0.9569931277478337
ERV3-16A3_LTR	ERV3-16A3_LTR	1111	1111	231	ident_name	-	-	-1	-1	-1	278353	19097	19097	1.0	0.06860712835859502
LTR82B	LTR82B	1219	1219	307	ident_name	-	-	-1	-1	-1	414849	23983	23975	0.9996664303881916	0.05779211231074439
LTR21A	LTR21A	105	105	96	ident_name	-	-	-1	-1	-1	38885	26139	26123	0.999387887830445	0.6718014658608717
LTR77	LTR77	103	103	96	ident_name	-	-	-1	-1	-1	51576	38669	38669	1.0	0.7497479447805181
LTR61	LTR61	167	167	142	ident_name	-	-	-1	-1	-1	62582	45784	45784	1.0	0.731584161580007
L1ME3C	L1ME3C	1219	1219	91	top50consensus	2029	4819.0	3875	39	3.0925778132482042	540949	6362	6340	0.9965419679346118	0.011720143673433171
LTR56	LTR56	1042	1042	780	ident_name	-	-	-1	-1	-1	288237	128038	128038	1.0	0.4442108403848222
MER41E	MER41E	377	377	337	ident_name	-	-	-1	-1	-1	137386	111536	111451	0.9992379142160379	0.8112253067998195
HERVFH19	HERVFH19-int	156	156	96	ident_name(-int)	-	-	-1	-1	-1	115234	95957	95957	1.0	0.8327143030702744
MER110A	MER110A	630	630	273	ident_name	-	-	-1	-1	-1	186652	26675	26670	0.9998125585754452	0.14288622677496088
MER11D	MER11D	263	263	259	ident_name	-	-	-1	-1	-1	194908	192264	192146	0.9993862605583989	0.9858292117306626
LTR1D1	LTR1D1	348	348	313	ident_name	-	-	-1	-1	-1	222916	159184	159142	0.9997361543873756	0.7139101724416372
hAT-N1a_Mam	hAT-N1a_Mam	754	754	68	ident_name	-	-	-1	-1	-1	139474	4293	4293	1.0	0.030779930309591752
hAT-N1_Mam	hAT-N1_Mam	403	403	41	ident_name	-	-	-1	-1	-1	71984	2841	2841	1.0	0.03946710380084463
MamGypLTR3a	MamGypLTR3a	2160	2160	84	ident_name	-	-	-1	-1	-1	693364	4329	4329	1.0	0.006243473846349104
Eutr10	Eutr10	1035	1035	144	ident_name	-	-	-1	-1	-1	332141	8998	8998	1.0	0.027090904164195326
MamRep488	MamRep488	824	824	66	ident_name	-	-	-1	-1	-1	110095	2641	2641	1.0	0.023988373677278713
ERVL-B4	ERVL-B4-int	2773	2773	2365	ident_name(-int)	-	-	-1	-1	-1	2325583	1583672	1582960	0.9995504119539905	0.6806723303360921
MER41-int	MER41-int	1405	1405	1213	ident_name	-	-	-1	-1	-1	1058254	844507	843535	0.9988490326308722	0.7971006960521765
Zaphod2	Zaphod2	581	581	225	ident_name	-	-	-1	-1	-1	158313	28242	28242	1.0	0.178393435788596
5S	5S	1210	1210	743	ident_name	-	-	-1	-1	-1	90169	47467	47467	1.0	0.5264226064390201
MER135	MER135	1841	1841	141	ident_name	-	-	-1	-1	-1	215859	5644	5519	0.9778525868178597	0.025567615897414516
MER57B2	MER57B2	1113	1113	947	ident_name	-	-	-1	-1	-1	308032	219310	219207	0.9995303451734987	0.7116371026386868
Tigger17	Tigger17	320	320	24	ident_name	-	-	-1	-1	-1	47414	8218	8205	0.9984181065952786	0.17305015396296453
LTR9	LTR9	786	786	722	ident_name	-	-	-1	-1	-1	334887	252290	252242	0.9998097427563518	0.7532152636560989
HUERS-P3b	HUERS-P3b-int	533	533	404	ident_name(-int)	-	-	-1	-1	-1	514389	353154	352787	0.9989607933083018	0.6858369832947439
LTR60B	LTR60B	265	265	197	ident_name	-	-	-1	-1	-1	102646	49953	49923	0.9993994354693412	0.4863608908286733
MER57C2	MER57C2	522	522	406	ident_name	-	-	-1	-1	-1	161284	81656	81621	0.99957137258744	0.5060700379454874
MER21-int	MER21-int	1178	1178	764	ident_name	-	-	-1	-1	-1	646337	303226	303173	0.9998252128775237	0.46906335239975433
Tigger4	Tigger4	1378	1378	1222	ident_name	-	-	-1	-1	-1	751252	597381	597264	0.9998041450933324	0.7950248385362035
MER70-int	MER70-int	245	245	159	ident_name	-	-	-1	-1	-1	171244	84508	84508	1.0	0.49349466258671837
MamRTE1	MamRTE1	3322	3322	60	ident_name	-	-	-1	-1	-1	938140	3215	3215	1.0	0.003426993838872663
LTR1C3	LTR1C3	101	101	56	ident_name	-	-	-1	-1	-1	27899	19632	19632	1.0	0.7036811355245708
7SK	7SK	1275	1275	276	ident_name	-	-	-1	-1	-1	212979	51579	51558	0.9995928575583086	0.24208020509064274
Kanga1d	Kanga1d	675	675	235	ident_name	-	-	-1	-1	-1	169656	21061	21061	1.0	0.12413943509218654
LTR51	LTR51	400	400	357	ident_name	-	-	-1	-1	-1	177125	125573	125528	0.9996416427098181	0.7086972477064221
HUERS-P1	HUERS-P1-int	553	553	444	ident_name(-int)	-	-	-1	-1	-1	429424	339629	338741	0.9973853822847872	0.7888264279593129
Kanga1c	Kanga1c	567	567	211	ident_name	-	-	-1	-1	-1	157111	23359	23359	1.0	0.14867832296911102
X4b_DNA	X4b_DNA	1199	1199	64	ident_name	-	-	-1	-1	-1	290507	3301	3301	1.0	0.011362893148874209
Kanga11a	Kanga11a	745	745	128	ident_name	-	-	-1	-1	-1	207109	9558	9558	1.0	0.04614961204003689
LTR54B	LTR54B	854	854	641	ident_name	-	-	-1	-1	-1	253812	100442	100442	1.0	0.39573385025136715
Zaphod5a	Zaphod5a	98	98	25	ident_name	-	-	-1	-1	-1	23020	1826	1826	1.0	0.07932232841007819
MER106A	MER106A	1239	1239	579	ident_name	-	-	-1	-1	-1	215210	40772	40772	1.0	0.1894521630035779
LTR7C	LTR7C	515	515	476	ident_name	-	-	-1	-1	-1	191483	157715	157562	0.9990298956979361	0.8228511147203669
Eulor9C	Eulor9C	263	263	13	ident_name	-	-	-1	-1	-1	30592	554	552	0.9963898916967509	0.018043933054393304
AmnSINE2	AmnSINE2	268	268	27	ident_name	-	-	-1	-1	-1	45644	1313	1313	1.0	0.028766102883182893
UCON14	UCON14	115	115	11	ident_name	-	-	-1	-1	-1	15817	457	457	1.0	0.02889296326737055
UCON70	UCON70	91	91	17	ident_name	-	-	-1	-1	-1	12943	899	899	1.0	0.06945839449895697
X22_DNA	X22_DNA	39	39	10	ident_name	-	-	-1	-1	-1	4614	708	696	0.9830508474576272	0.1508452535760728
UCON29	UCON29	362	362	40	ident_name	-	-	-1	-1	-1	82880	2515	2466	0.9805168986083499	0.029753861003861005
Charlie13a	Charlie13a	560	560	142	ident_name	-	-	-1	-1	-1	206195	14311	14311	1.0	0.06940517471325687
MLT2F	MLT2F	1965	1965	675	ident_name	-	-	-1	-1	-1	677604	66063	66063	1.0	0.09749499707793932
UCON85	UCON85	106	106	13	ident_name	-	-	-1	-1	-1	14168	581	581	1.0	0.04100790513833992
UCON105	UCON105	1682	1682	83	ident_name	-	-	-1	-1	-1	312658	3537	3537	1.0	0.011312680308835853
UCON81	UCON81	49	49	7	ident_name	-	-	-1	-1	-1	3005	369	369	1.0	0.12279534109816971
LTR103b_Mam	LTR103b_Mam	1192	1192	30	ident_name	-	-	-1	-1	-1	331523	1262	1262	1.0	0.0038066740467478876
AluYd8	AluYd8	305	305	236	ident_name	-	-	-1	-1	-1	63108	53263	53263	1.0	0.8439975914305635
MamTip3	MamTip3	1592	1592	186	ident_name	-	-	-1	-1	-1	332021	10106	10106	1.0	0.030437833751479574
Charlie14a	Charlie14a	506	506	67	ident_name	-	-	-1	-1	-1	106657	3752	3752	1.0	0.03517818802328961
LTR26C	LTR26C	251	251	208	ident_name	-	-	-1	-1	-1	81449	54740	54684	0.9989769820971867	0.6713894584341121
EutTc1-N2	EutTc1-N2	202	202	113	ident_name	-	-	-1	-1	-1	31166	9557	9461	0.9899550068012974	0.30356799075916063
MER61C	MER61C	274	274	266	ident_name	-	-	-1	-1	-1	100395	75251	75217	0.9995481787617441	0.7492106180586683
UCON69	UCON69	45	45	5	ident_name	-	-	-1	-1	-1	8560	268	268	1.0	0.03130841121495327
L2-2_Mam	L2-2_Mam	339	339	7	ident_name	-	-	-1	-1	-1	57015	249	249	1.0	0.004367271770586688
UCON38	UCON38	387	387	17	ident_name	-	-	-1	-1	-1	78169	953	953	1.0	0.012191533728204276
LTR43B	LTR43B	238	238	184	ident_name	-	-	-1	-1	-1	84724	40825	40825	1.0	0.4818587413247722
MER70C	MER70C	297	297	206	ident_name	-	-	-1	-1	-1	107005	36022	36022	1.0	0.33663847483762444
LTR47B2	LTR47B2	173	173	142	ident_name	-	-	-1	-1	-1	55086	40173	40173	1.0	0.7292778564426533
X1_DNA	X1_DNA	776	776	119	ident_name	-	-	-1	-1	-1	166711	9333	9333	1.0	0.055983108493140823
X33a_DNA	X33a_DNA	86	86	13	ident_name	-	-	-1	-1	-1	16565	998	998	1.0	0.060247509809840026
X10b_DNA	X10b_DNA	977	977	13	ident_name	-	-	-1	-1	-1	116596	600	600	1.0	0.005145974132903359
HY3	HY3	535	535	498	ident_name	-	-	-1	-1	-1	46482	39637	39637	1.0	0.8527386945484273
ERV24B_Prim	ERV24B_Prim-int	874	874	193	ident_name(-int)	-	-	-1	-1	-1	589995	67510	67484	0.999614871870834	0.11438063034432495
L1P4d	L1P4d	224	224	115	top50consensus	4089	5257.0	6683	49	3.1823809523809525	228411	51900	51900	1.0	0.22722198142821493
AluYb9	AluYb9	397	397	335	ident_name	-	-	-1	-1	-1	90144	81016	80991	0.9996914189789671	0.8984624600638977
SVA_F	SVA_F	434	434	390	ident_name	-	-	-1	-1	-1	539630	505257	297972	0.5897434374981445	0.5521783444211775
L1M6B	L1M6B	2045	2045	5	top50consensus	1446	2474.0	2898	33	3.3044469783352337	552595	266	266	1.0	0.00048136519512482015
UCON87B	UCON87B	68	68	7	ident_name	-	-	-1	-1	-1	11155	380	380	1.0	0.0340654415060511
UCON87	UCON87	22	22	7	ident_name	-	-	-1	-1	-1	4543	758	758	1.0	0.16685009905348888
MamRep1894	MamRep1894	1903	1903	141	ident_name	-	-	-1	-1	-1	184536	4486	4486	1.0	0.024309619803182036
LTR1C1	LTR1C1	94	94	70	ident_name	-	-	-1	-1	-1	40873	32839	32729	0.9966503243095101	0.8007486604849167
MER67B	MER67B	470	470	325	ident_name	-	-	-1	-1	-1	177866	66166	66166	1.0	0.3719991454240833
U3	U3	217	217	183	ident_name	-	-	-1	-1	-1	24152	14134	14134	1.0	0.5852103345478635
Eutr11	Eutr11	747	747	193	ident_name	-	-	-1	-1	-1	184149	13621	13584	0.9972836061963145	0.0737663522473649
MER97c	MER97c	406	406	187	ident_name	-	-	-1	-1	-1	106152	21866	21866	1.0	0.20598764036475997
MER97d	MER97d	300	300	145	ident_name	-	-	-1	-1	-1	91937	18455	18249	0.9888377133568139	0.19849462131677126
MLT2E	MLT2E	373	373	94	ident_name	-	-	-1	-1	-1	113403	7764	7764	1.0	0.06846379725404089
LTR65	LTR65	448	448	247	ident_name	-	-	-1	-1	-1	130473	44583	44583	1.0	0.3417028810558506
HSMAR2	HSMAR2	1800	1800	1651	ident_name	-	-	-1	-1	-1	1094470	939439	939082	0.9996199859703504	0.8580244319168182
Tigger8	Tigger8	1261	1261	157	ident_name	-	-	-1	-1	-1	316819	9497	9497	1.0	0.02997610623100256
PRIMA41-int	PRIMA41-int	756	756	348	ident_name	-	-	-1	-1	-1	627732	186727	186627	0.9994644588088493	0.2973036263883313
LTR22B1	LTR22B1	138	138	133	ident_name	-	-	-1	-1	-1	60391	42719	42719	1.0	0.707373615273799
HERV4_I	HERV4_I-int	208	208	153	ident_name(-int)	-	-	-1	-1	-1	187933	134907	134817	0.9993328737574774	0.7173673596441285
Zaphod4a	Zaphod4a	399	399	86	ident_name	-	-	-1	-1	-1	122749	7302	7302	1.0	0.05948724633194568
MER89-int	MER89-int	1017	1017	322	ident_name	-	-	-1	-1	-1	491014	96170	96170	1.0	0.1958599958453323
LTR102_Mam	LTR102_Mam	501	501	282	ident_name	-	-	-1	-1	-1	189654	38025	38025	1.0	0.2004966939795628
LTR10F	LTR10F	441	441	426	ident_name	-	-	-1	-1	-1	180545	162976	159859	0.9808744845866876	0.8854246863662799
HERV-Fc2	HERV-Fc2-int	27	27	8	ident_name(-int)	-	-	-1	-1	-1	26320	7018	7018	1.0	0.26664133738601825
MER6	MER6	838	838	712	ident_name	-	-	-1	-1	-1	366238	246672	246641	0.9998743270415775	0.6734445906760085
Tigger6a	Tigger6a	816	816	604	ident_name	-	-	-1	-1	-1	386960	186083	186049	0.9998172858348157	0.48079646475087867
ERV24_Prim	ERV24_Prim-int	741	741	220	ident_name(-int)	-	-	-1	-1	-1	436405	95028	94984	0.9995369785747359	0.2176510351622919
HERVK	HERVK-int	216	216	210	ident_name(-int)	-	-	-1	-1	-1	474160	446022	446022	1.0	0.9406571621393622
MER41G	MER41G	119	119	96	ident_name	-	-	-1	-1	-1	47936	31794	31793	0.9999685475246902	0.663238484646195
L1HS	L1HS	1494	1494	1434	top50consensus	6058	6419.0	6149	1	1.0165316581253099	3324232	3291453	3289920	0.999534248248418	0.9896782174048021
LTR44	LTR44	212	212	187	ident_name	-	-	-1	-1	-1	65096	45595	45550	0.9990130496764996	0.6997357748555979
MER34-int	MER34-int	344	344	169	ident_name	-	-	-1	-1	-1	167429	74059	74025	0.9995409065744879	0.442127707864229
LTR45	LTR45	193	193	135	ident_name	-	-	-1	-1	-1	55381	31963	31963	1.0	0.5771473971217566
MER110-int	MER110-int	640	640	152	ident_name	-	-	-1	-1	-1	346849	25136	25122	0.9994430299172502	0.07242921271216005
LTR45B	LTR45B	462	462	367	ident_name	-	-	-1	-1	-1	144977	86753	86714	0.9995504478231301	0.5981224608041276
MER101-int	MER101-int	1020	1020	554	ident_name	-	-	-1	-1	-1	519691	202595	202357	0.9988252424788371	0.3893794581780327
L1M3f	L1M3f	777	777	544	top50consensus	4270	5713.0	6728	40	2.3280276816609	673787	338844	338696	0.9995632208331858	0.5026751777638927
LTR57	LTR57	264	264	226	ident_name	-	-	-1	-1	-1	80283	55772	55772	1.0	0.6946925251921329
HERV3	HERV3-int	274	274	217	ident_name(-int)	-	-	-1	-1	-1	379833	251600	251472	0.9994912559618442	0.6620593787269669
HERVE	HERVE-int	233	233	213	ident_name(-int)	-	-	-1	-1	-1	502404	462545	462531	0.9999697326746587	0.9206355841115915
SVA_C	SVA_C	307	307	260	ident_name	-	-	-1	-1	-1	215784	201904	164265	0.8135797210555512	0.7612473584695807
LTR12F	LTR12F	443	443	417	ident_name	-	-	-1	-1	-1	178453	143986	141396	0.9820121400691734	0.7923430819319373
HERV9N	HERV9N-int	277	277	212	ident_name(-int)	-	-	-1	-1	-1	369695	337627	335720	0.9943517550432874	0.9080999202044929
LOR1b	LOR1b	1107	1107	1000	ident_name	-	-	-1	-1	-1	370680	275551	275525	0.999905643601366	0.7432961044566743
LTR88a	LTR88a	2528	2528	50	ident_name	-	-	-1	-1	-1	681923	1863	1863	1.0	0.0027319800036074452
MER6C	MER6C	165	165	123	ident_name	-	-	-1	-1	-1	23221	13334	13057	0.9792260386980651	0.5622927522501184
LTR10B	LTR10B	88	88	72	ident_name	-	-	-1	-1	-1	35111	23257	23229	0.9987960614008685	0.6615875366694198
HSMAR1	HSMAR1	620	620	590	ident_name	-	-	-1	-1	-1	463216	435594	435509	0.9998048641624999	0.9401855721736727
UCON58	UCON58	466	466	35	ident_name	-	-	-1	-1	-1	92080	2024	1968	0.9723320158102767	0.021372719374456995
tRNA-Val-GTG	tRNA-Val-GTG	49	49	30	ident_name	-	-	-1	-1	-1	2802	1632	1632	1.0	0.582441113490364
LTR22A	LTR22A	169	169	165	ident_name	-	-	-1	-1	-1	69115	59698	59698	1.0	0.863748824423063
Tigger12A	Tigger12A	1161	1161	65	ident_name	-	-	-1	-1	-1	190137	3972	3972	1.0	0.020890200224048975
Tigger18a	Tigger18a	1412	1412	355	ident_name	-	-	-1	-1	-1	438537	27690	27690	1.0	0.06314176454894342
Ricksha_a	Ricksha_a	102	102	87	ident_name	-	-	-1	-1	-1	26505	16476	15789	0.9583029861616897	0.5956989247311828
LTR80A	LTR80A	375	375	165	ident_name	-	-	-1	-1	-1	128602	18729	18691	0.9979710609215655	0.14533988584936472
Charlie31a	Charlie31a	954	954	98	ident_name	-	-	-1	-1	-1	230931	5023	5023	1.0	0.02175108582217199
UCON35	UCON35	345	345	32	ident_name	-	-	-1	-1	-1	36318	1500	1500	1.0	0.04130183380142078
LTR86B1	LTR86B1	347	347	42	ident_name	-	-	-1	-1	-1	88863	2591	2591	1.0	0.029157242046746114
MamGypLTR1c	MamGypLTR1c	1928	1928	102	ident_name	-	-	-1	-1	-1	648497	4688	4688	1.0	0.007229023418766779
LTR55	LTR55	418	418	296	ident_name	-	-	-1	-1	-1	153717	50463	50463	1.0	0.32828509533753586
OldhAT1	OldhAT1	270	270	32	ident_name	-	-	-1	-1	-1	72599	1778	1778	1.0	0.02449069546412485
X34_DNA	X34_DNA	129	129	18	ident_name	-	-	-1	-1	-1	16438	1235	1235	1.0	0.07513079450054751
MER6A	MER6A	968	968	876	ident_name	-	-	-1	-1	-1	367368	248061	247989	0.9997097488117842	0.6750424642320507
MER6B	MER6B	709	709	455	ident_name	-	-	-1	-1	-1	115870	42759	41748	0.9763558549077387	0.3603003365841029
X15_LINE	X15_LINE	37	37	8	ident_name	-	-	-1	-1	-1	7092	972	972	1.0	0.13705583756345177
LTR82A	LTR82A	943	943	349	ident_name	-	-	-1	-1	-1	349111	34152	34145	0.9997950339657999	0.09780556900240897
LTR9A1	LTR9A1	475	475	452	ident_name	-	-	-1	-1	-1	232866	180102	179903	0.9988950705711208	0.7725601848273256
LTR53-int	LTR53-int	439	439	240	ident_name	-	-	-1	-1	-1	253038	83455	83455	1.0	0.32981212308032787
tRNA-Ile-ATT	tRNA-Ile-ATT	156	156	54	ident_name	-	-	-1	-1	-1	8913	2550	2550	1.0	0.286098956580276
tRNA-Thr-ACA	tRNA-Thr-ACA	28	28	21	ident_name	-	-	-1	-1	-1	1399	910	910	1.0	0.6504646175839885
MER133A	MER133A	189	189	13	ident_name	-	-	-1	-1	-1	14823	463	463	1.0	0.031235242528503
LTR32	LTR32	1390	1390	1147	ident_name	-	-	-1	-1	-1	364585	220686	220671	0.9999320301242489	0.6052662616399468
CR1-1_Amn	CR1-1_Amn	145	145	6	ident_name	-	-	-1	-1	-1	25011	487	487	1.0	0.019471432569669347
X1_LINE	X1_LINE	92	92	25	ident_name	-	-	-1	-1	-1	26269	2399	2399	1.0	0.09132437473828467
LTR16B	LTR16B	776	776	274	ident_name	-	-	-1	-1	-1	230875	25743	25743	1.0	0.1115018949648078
UCON65	UCON65	39	39	5	ident_name	-	-	-1	-1	-1	6864	367	367	1.0	0.05346736596736597
X6B_LINE	X6B_LINE	253	253	40	ident_name	-	-	-1	-1	-1	53534	2095	2095	1.0	0.0391340082937946
X2b_DNA	X2b_DNA	645	645	41	ident_name	-	-	-1	-1	-1	75033	1503	1483	0.9866932801064537	0.01976463689310037
EUTREP2	EUTREP2	1261	1261	62	ident_name	-	-	-1	-1	-1	250991	3195	3195	1.0	0.012729540103031583
LTR10D	LTR10D	172	172	165	ident_name	-	-	-1	-1	-1	74152	67936	67917	0.9997203250117758	0.9159159564138526
PRIMA4_LTR	PRIMA4_LTR	342	342	320	ident_name	-	-	-1	-1	-1	141680	116703	116591	0.9990402988783493	0.8229178430265387
MER57E2	MER57E2	118	118	90	ident_name	-	-	-1	-1	-1	32009	16161	16161	1.0	0.5048892498984661
LTR1F2	LTR1F2	219	219	146	ident_name	-	-	-1	-1	-1	106898	59280	59252	0.999527665317139	0.5542853935527325
UCON78	UCON78	291	291	36	ident_name	-	-	-1	-1	-1	57330	1925	1917	0.9958441558441559	0.033437990580847725
MER57F	MER57F	416	416	340	ident_name	-	-	-1	-1	-1	123136	74319	74319	1.0	0.60355216995842
DNA1_Mam	DNA1_Mam	162	162	101	ident_name	-	-	-1	-1	-1	30581	10231	9860	0.9637376600527807	0.3224224191491449
LTR12B	LTR12B	366	366	347	ident_name	-	-	-1	-1	-1	418871	191915	143564	0.7480603392126722	0.3427403663657785
Charlie17b	Charlie17b	560	560	194	ident_name	-	-	-1	-1	-1	189276	22800	22800	1.0	0.12045901223609966
MER129	MER129	177	177	22	ident_name	-	-	-1	-1	-1	37826	1393	1393	1.0	0.036826521440279175
LTR34	LTR34	302	302	219	ident_name	-	-	-1	-1	-1	114156	60081	60049	0.9994673856959772	0.5260257892708223
EUTREP16	EUTREP16	774	774	54	ident_name	-	-	-1	-1	-1	168341	2170	2170	1.0	0.012890502016739832
tRNA-Val-GTY	tRNA-Val-GTY	47	47	15	ident_name	-	-	-1	-1	-1	2864	891	891	1.0	0.31110335195530725
LTR4	LTR4	116	116	105	ident_name	-	-	-1	-1	-1	53501	32264	32230	0.9989461939003224	0.6024186463804415
LTR39-int	LTR39-int	183	183	82	ident_name	-	-	-1	-1	-1	79635	30268	30268	1.0	0.38008413386073964
MER87	MER87	173	173	141	ident_name	-	-	-1	-1	-1	62650	37353	37353	1.0	0.5962170790103751
LTR49	LTR49	1374	1374	1097	ident_name	-	-	-1	-1	-1	494424	261228	261194	0.9998698454989511	0.5282793715515428
MER51D	MER51D	155	155	103	ident_name	-	-	-1	-1	-1	43868	25513	25513	1.0	0.5815856660891766
tRNA-Asn-AAC	tRNA-Asn-AAC	63	63	45	ident_name	-	-	-1	-1	-1	4493	3154	3154	1.0	0.7019808591141776
tRNA-His-CAY	tRNA-His-CAY	45	45	7	ident_name	-	-	-1	-1	-1	2812	352	352	1.0	0.1251778093883357
tRNA-Gly-GGG	tRNA-Gly-GGG	40	40	23	ident_name	-	-	-1	-1	-1	2525	1207	1207	1.0	0.478019801980198
tRNA-Gln-CAG	tRNA-Gln-CAG	120	120	71	ident_name	-	-	-1	-1	-1	6124	3387	3387	1.0	0.5530698889614631
MER97a	MER97a	468	468	230	ident_name	-	-	-1	-1	-1	150186	34432	34356	0.997792750929368	0.22875634213575166
LTR75B	LTR75B	161	161	94	ident_name	-	-	-1	-1	-1	55754	11762	11762	1.0	0.21096244215661655
LTR25	LTR25	336	336	236	ident_name	-	-	-1	-1	-1	144948	76525	75989	0.9929957530218882	0.5242500758892844
L1M3a	L1M3a	898	898	138	top50consensus	1904	4220.0	4271	29	4.344862665310274	390735	27679	27648	0.998880017341667	0.07075895427847519
LTR76	LTR76	209	209	180	ident_name	-	-	-1	-1	-1	97480	73981	73965	0.9997837282545519	0.7587710299548626
tRNA-Met	tRNA-Met	100	100	39	ident_name	-	-	-1	-1	-1	5190	1940	1940	1.0	0.3737957610789981
PABL_B	PABL_B	286	286	159	ident_name	-	-	-1	-1	-1	98471	17632	17632	1.0	0.17905779366514
LTR15	LTR15	267	267	261	ident_name	-	-	-1	-1	-1	104013	95639	95639	1.0	0.9194908328766597
MER4CL34	MER4CL34	757	757	668	ident_name	-	-	-1	-1	-1	309054	185389	184724	0.9964129479095307	0.5977078439366583
LTR38B	LTR38B	202	202	171	ident_name	-	-	-1	-1	-1	78447	45681	45681	1.0	0.582316723392864
HERV-Fc2_LTR	HERV-Fc2_LTR	7	7	2	ident_name	-	-	-1	-1	-1	1252	741	741	1.0	0.59185303514377
LTR26B	LTR26B	127	127	106	ident_name	-	-	-1	-1	-1	37074	28138	28138	1.0	0.7589685493877111
MER61-int	MER61-int	920	920	823	ident_name	-	-	-1	-1	-1	1087701	868414	865195	0.9962932426239098	0.7954345909399734
L1M3de	L1M3de	595	595	148	top50consensus	3439	5648.0	6941	38	3.937039137833239	365272	57533	57322	0.9963325395859768	0.15692963052191244
MER66A	MER66A	344	344	296	ident_name	-	-	-1	-1	-1	112285	72774	72746	0.9996152472036717	0.6478692612548426
X23_DNA	X23_DNA	69	69	24	ident_name	-	-	-1	-1	-1	13616	1522	1502	0.9868593955321945	0.11031139835487662
UCON44	UCON44	554	554	37	ident_name	-	-	-1	-1	-1	135097	2156	2156	1.0	0.015958903602596653
UCON47	UCON47	202	202	32	ident_name	-	-	-1	-1	-1	34237	2036	2036	1.0	0.05946782720448637
UCON89	UCON89	72	72	9	ident_name	-	-	-1	-1	-1	12660	556	556	1.0	0.04391785150078989
L2-1_Crp	L2-1_Crp	52	52	0	ident_name	-	-	-1	-1	-1	7262	None	None	None	-1
UCON86	UCON86	143	143	12	ident_name	-	-	-1	-1	-1	24614	551	551	1.0	0.022385634191923295
Arthur2	Arthur2	1155	1155	192	ident_name	-	-	-1	-1	-1	382371	18002	18002	1.0	0.047079930224834
Helitron1Na_Mam	Helitron1Na_Mam	441	441	83	ident_name	-	-	-1	-1	-1	113492	5692	5692	1.0	0.050153314771085186
Helitron1Nb_Mam	Helitron1Nb_Mam	360	360	64	ident_name	-	-	-1	-1	-1	93138	4663	4663	1.0	0.0500654942128884
HERV17	HERV17-int	808	808	748	ident_name(-int)	-	-	-1	-1	-1	886215	825414	823349	0.9974982251330847	0.9290623607138223
X11_DNA	X11_DNA	439	439	25	ident_name	-	-	-1	-1	-1	87549	1725	1725	1.0	0.01970325189322551
MER83B-int	MER83B-int	219	219	147	ident_name	-	-	-1	-1	-1	103522	54987	54945	0.9992361830978231	0.5307567473580495
LTR1F1	LTR1F1	225	225	174	ident_name	-	-	-1	-1	-1	119274	88152	88152	1.0	0.7390713818602546
L1M2a	L1M2a	700	700	252	top50consensus	4149	5713.0	7309	46	2.6491482421167087	510320	142161	141897	0.9981429505982653	0.2780549459162878
HUERS-P3	HUERS-P3-int	538	538	453	ident_name(-int)	-	-	-1	-1	-1	537062	390296	390089	0.9994696333039539	0.7263388584558207
LTR1D	LTR1D	291	291	273	ident_name	-	-	-1	-1	-1	221539	175929	175850	0.9995509552148878	0.793765431820131
U4	U4	171	171	118	ident_name	-	-	-1	-1	-1	15622	9982	9982	1.0	0.6389706823710153
LTR28	LTR28	156	156	132	ident_name	-	-	-1	-1	-1	108624	73407	73216	0.9973980683041127	0.6740315215790249
LTR30	LTR30	149	149	133	ident_name	-	-	-1	-1	-1	86280	78045	78045	1.0	0.9045549374130737
LTR1B0	LTR1B0	116	116	85	ident_name	-	-	-1	-1	-1	61726	48901	48895	0.9998773031226356	0.7921297346337038
LTR14	LTR14	96	96	89	ident_name	-	-	-1	-1	-1	44229	37825	37825	1.0	0.855208121368333
HERVK14C	HERVK14C-int	116	116	76	ident_name(-int)	-	-	-1	-1	-1	182804	118141	118141	1.0	0.6462714163803855
LTR86B2	LTR86B2	380	380	42	ident_name	-	-	-1	-1	-1	92817	2349	2349	1.0	0.025307863861146127
MamGyp-int	MamGyp-int	836	836	35	ident_name	-	-	-1	-1	-1	328063	3099	3099	1.0	0.009446356340093214
LTR46-int	LTR46-int	83	83	61	ident_name	-	-	-1	-1	-1	109413	91166	91125	0.9995502709343396	0.8328535000411286
L1PBa	L1PBa	2391	2391	1690	top50consensus	5176	6866.0	8794	27	1.9533540648600622	2914911	1976571	1974657	0.9990316563381735	0.6774330331183354
MER4-int	MER4-int	2177	2177	1781	ident_name	-	-	-1	-1	-1	1762731	1262404	1260353	0.9983753220046832	0.7150001900460138
LTR26D	LTR26D	192	192	180	ident_name	-	-	-1	-1	-1	67744	56698	56657	0.9992768704363469	0.8363397496457251
LTR107_Mam	LTR107_Mam	513	513	126	ident_name	-	-	-1	-1	-1	123063	9425	9425	1.0	0.0765867888804921
MER134	MER134	93	93	19	ident_name	-	-	-1	-1	-1	15053	1310	1310	1.0	0.08702584202484555
MamRTE2	MamRTE2	60	60	0	ident_name	-	-	-1	-1	-1	14346	None	None	None	-1
UCON21	UCON21	35	35	6	ident_name	-	-	-1	-1	-1	5081	384	384	1.0	0.07557567407990554
Eulor1	Eulor1	134	134	18	ident_name	-	-	-1	-1	-1	24148	1156	1120	0.9688581314878892	0.04638065264204075
U7	U7	240	240	190	ident_name	-	-	-1	-1	-1	13193	7815	7815	1.0	0.5923595846282119
Tigger2b_Pri	Tigger2b_Pri	1203	1203	1023	ident_name	-	-	-1	-1	-1	500221	374267	374098	0.999548450704978	0.7478654434739845
MER73	MER73	270	270	251	ident_name	-	-	-1	-1	-1	111125	66989	66989	1.0	0.6028256467941507
L1M3d	L1M3d	747	747	138	top50consensus	2551	5019.0	5506	29	4.245181187355436	368149	14035	14032	0.9997862486640542	0.03811500234959215
X2a_DNA	X2a_DNA	1392	1392	55	ident_name	-	-	-1	-1	-1	168150	2137	2121	0.9925128685072532	0.012613737734165924
PABL_A	PABL_A	645	645	629	ident_name	-	-	-1	-1	-1	304313	286899	286712	0.9993482026775974	0.9421615244830158
LTR28C	LTR28C	237	237	211	ident_name	-	-	-1	-1	-1	168430	93628	93628	1.0	0.5558867185180787
Eulor9A	Eulor9A	289	289	28	ident_name	-	-	-1	-1	-1	43453	1273	1262	0.9913589945011784	0.02904287390974156
MER57-int	MER57-int	1115	1115	987	ident_name	-	-	-1	-1	-1	865135	729476	729080	0.9994571445804934	0.8427355268252932
Charlie10a	Charlie10a	314	314	109	ident_name	-	-	-1	-1	-1	56681	7892	7656	0.9700963000506843	0.13507171715389638
LTR47A2	LTR47A2	263	263	236	ident_name	-	-	-1	-1	-1	69218	47477	47477	1.0	0.6859054003293941
LTR1	LTR1	182	182	155	ident_name	-	-	-1	-1	-1	96343	74425	74388	0.9995028552233792	0.7721162928287473
LTR43-int	LTR43-int	116	116	76	ident_name	-	-	-1	-1	-1	74221	38641	38596	0.9988354338655832	0.5200145511378181
Tigger21a	Tigger21a	188	188	33	ident_name	-	-	-1	-1	-1	54166	2864	2864	1.0	0.05287449691688513
Eutr5	Eutr5	592	592	27	ident_name	-	-	-1	-1	-1	224508	1622	1622	1.0	0.007224686870846473
MER50-int	MER50-int	492	492	359	ident_name	-	-	-1	-1	-1	445306	295317	294958	0.9987843571484202	0.6623714928610888
MER4D0	MER4D0	382	382	346	ident_name	-	-	-1	-1	-1	170810	134104	134018	0.999358706675416	0.7846027750131725
CR1-12_AMi	CR1-12_AMi	128	128	11	ident_name	-	-	-1	-1	-1	33701	597	597	1.0	0.017714607875137237
X4a_DNA	X4a_DNA	329	329	17	ident_name	-	-	-1	-1	-1	61676	782	782	1.0	0.012679162072767364
PABL_B-int	PABL_B-int	395	395	91	ident_name	-	-	-1	-1	-1	310930	35660	35660	1.0	0.11468819348406394
LTR88c	LTR88c	1687	1687	48	ident_name	-	-	-1	-1	-1	347914	1919	1919	1.0	0.005515730899015274
Charlie10b	Charlie10b	268	268	100	ident_name	-	-	-1	-1	-1	46148	7412	7389	0.9968969239071775	0.16011528126896074
Charlie30b	Charlie30b	425	425	59	ident_name	-	-	-1	-1	-1	134862	4162	4139	0.9944738106679482	0.030690631905206805
HY4	HY4	164	164	156	ident_name	-	-	-1	-1	-1	13141	11398	11398	1.0	0.8673616924130584
LTR87	LTR87	664	664	309	ident_name	-	-	-1	-1	-1	214357	35542	35542	1.0	0.16580750803566013
UCON37	UCON37	504	504	19	ident_name	-	-	-1	-1	-1	80002	802	802	1.0	0.010024749381265468
HERV1_LTRd	HERV1_LTRd	14	14	14	ident_name	-	-	-1	-1	-1	6520	6069	6069	1.0	0.9308282208588957
PABL_A-int	PABL_A-int	379	379	194	ident_name	-	-	-1	-1	-1	300784	188293	187854	0.9976685272421173	0.6245478482898027
LTR80B	LTR80B	540	540	204	ident_name	-	-	-1	-1	-1	192128	21361	21361	1.0	0.11118108760826116
Eutr16	Eutr16	652	652	79	ident_name	-	-	-1	-1	-1	177223	4702	4702	1.0	0.026531545002623814
tRNA-Thr-ACY	tRNA-Thr-ACY	104	104	26	ident_name	-	-	-1	-1	-1	5475	1291	1291	1.0	0.23579908675799086
Zaphod5b	Zaphod5b	99	99	19	ident_name	-	-	-1	-1	-1	18512	1174	1174	1.0	0.06341832324978393
MER57E1	MER57E1	501	501	366	ident_name	-	-	-1	-1	-1	130184	56055	56055	1.0	0.43058286732624595
MER41C	MER41C	794	794	690	ident_name	-	-	-1	-1	-1	260050	198864	198864	1.0	0.7647144779850029
hAT-5_Mam	hAT-5_Mam	668	668	76	ident_name	-	-	-1	-1	-1	197265	4631	4631	1.0	0.023476034775555724
EUTREP7	EUTREP7	300	300	103	ident_name	-	-	-1	-1	-1	65494	9161	9161	1.0	0.1398754084343604
LTR28B	LTR28B	354	354	245	ident_name	-	-	-1	-1	-1	211068	121872	121627	0.9979896941052908	0.5762455701480091
Looper	Looper	516	516	339	ident_name	-	-	-1	-1	-1	181662	76782	76751	0.9995962595399963	0.4224934218493686
LTR22B2	LTR22B2	47	47	35	ident_name	-	-	-1	-1	-1	14037	11566	11566	1.0	0.8239652347367671
X6A_LINE	X6A_LINE	396	396	44	ident_name	-	-	-1	-1	-1	89173	2750	2750	1.0	0.030838931066578448
Eulor12	Eulor12	139	139	6	ident_name	-	-	-1	-1	-1	16663	261	252	0.9655172413793104	0.015123327131969034
LTR6A	LTR6A	284	284	267	ident_name	-	-	-1	-1	-1	121754	83902	83902	1.0	0.6891108300343315
MamGypLTR3	MamGypLTR3	976	976	41	ident_name	-	-	-1	-1	-1	272184	1850	1850	1.0	0.006796872703759222
MER68B	MER68B	496	496	295	ident_name	-	-	-1	-1	-1	175906	49149	49127	0.9995523815337036	0.2792798426432299
UCON93	UCON93	36	36	10	ident_name	-	-	-1	-1	-1	4066	519	519	1.0	0.12764387604525332
HERVE_a	HERVE_a-int	261	261	241	ident_name(-int)	-	-	-1	-1	-1	422481	376904	376783	0.9996789633434509	0.8918341889931145
LTR35A	LTR35A	92	92	88	ident_name	-	-	-1	-1	-1	32395	25329	25329	1.0	0.7818799197407007
MER51-int	MER51-int	651	651	555	ident_name	-	-	-1	-1	-1	492116	379235	378894	0.9991008213904308	0.7699282283038958
MER97b	MER97b	159	159	76	ident_name	-	-	-1	-1	-1	48633	10107	10107	1.0	0.20782184936154463
HERVK14	HERVK14-int	508	508	332	ident_name(-int)	-	-	-1	-1	-1	284630	234453	234412	0.9998251248651115	0.8235674384288374
MamGypsy2-LTR	MamGypsy2-LTR	720	720	30	ident_name	-	-	-1	-1	-1	96373	1341	1341	1.0	0.013914685648470006
MER34D	MER34D	235	235	200	ident_name	-	-	-1	-1	-1	82266	57625	57625	1.0	0.7004716407750468
MER65C	MER65C	689	689	576	ident_name	-	-	-1	-1	-1	216052	131769	131757	0.9999089315392846	0.6098392979467906
MamTip3B	MamTip3B	988	988	157	ident_name	-	-	-1	-1	-1	229976	9025	9025	1.0	0.03924322538003966
UCON6	UCON6	114	114	16	ident_name	-	-	-1	-1	-1	23726	857	857	1.0	0.0361207114557869
UCON11	UCON11	54	54	19	ident_name	-	-	-1	-1	-1	12796	1906	1906	1.0	0.14895279774929665
MER57D	MER57D	394	394	301	ident_name	-	-	-1	-1	-1	110918	58456	58436	0.999657862323799	0.5268396473070196
LTR38	LTR38	326	326	179	ident_name	-	-	-1	-1	-1	125554	36517	36517	1.0	0.2908469662455995
U17	U17	12	12	8	ident_name	-	-	-1	-1	-1	1809	1195	1195	1.0	0.6605859590934218
LTR35	LTR35	90	90	76	ident_name	-	-	-1	-1	-1	32361	23363	23363	1.0	0.7219492599116221
Ricksha_b	Ricksha_b	275	275	186	ident_name	-	-	-1	-1	-1	98659	68675	67997	0.9901274117218785	0.6892123374451393
UCON19	UCON19	38	38	9	ident_name	-	-	-1	-1	-1	7283	565	565	1.0	0.07757792118632431
L1MDb	L1MDb	1000	1000	228	top50consensus	1983	3907.0	3670	40	3.091828138163437	440275	39084	39084	1.0	0.0887717903582988
LTR88b	LTR88b	2675	2675	96	ident_name	-	-	-1	-1	-1	698145	4300	4300	1.0	0.006159178967120011
LTR31	LTR31	253	253	200	ident_name	-	-	-1	-1	-1	105547	56490	56490	1.0	0.5352118013775854
L1M3c	L1M3c	831	831	271	top50consensus	3002	5751.0	5973	49	3.492982456140351	448782	64192	64044	0.9976944167497508	0.1427062582723906
HERVK22	HERVK22-int	424	424	363	ident_name(-int)	-	-	-1	-1	-1	529455	482028	481732	0.9993859277884273	0.9098639166690276
LTR17	LTR17	859	859	829	ident_name	-	-	-1	-1	-1	483845	455940	455880	0.9998684037373339	0.9422025648709814
MER83B	MER83B	131	131	118	ident_name	-	-	-1	-1	-1	34302	24959	24959	1.0	0.7276252113579383
PrimLTR79	PrimLTR79	133	133	91	ident_name	-	-	-1	-1	-1	36979	20480	20480	1.0	0.5538278482381892
UCON33	UCON33	227	227	23	ident_name	-	-	-1	-1	-1	45739	1729	1729	1.0	0.03780143859725836
LTR14B	LTR14B	345	345	337	ident_name	-	-	-1	-1	-1	164374	141928	141737	0.9986542472239446	0.8622835728278195
LTR27	LTR27	306	306	290	ident_name	-	-	-1	-1	-1	154225	107173	107173	1.0	0.6949132760577079
MER74C	MER74C	227	227	173	ident_name	-	-	-1	-1	-1	73020	30540	30540	1.0	0.4182415776499589
Charlie24	Charlie24	578	578	137	ident_name	-	-	-1	-1	-1	235386	14725	14725	1.0	0.06255682156118036
L1PBa1	L1PBa1	575	575	473	top50consensus	6125	6209.0	7831	12	1.8770373921380632	806267	617011	616359	0.9989432927451861	0.7644601602198775
MER99	MER99	292	292	165	ident_name	-	-	-1	-1	-1	99659	32601	32601	1.0	0.32712549794800266
UCON48	UCON48	404	404	36	ident_name	-	-	-1	-1	-1	111912	1750	1750	1.0	0.0156372864393452
tRNA-Asp-GAY	tRNA-Asp-GAY	58	58	36	ident_name	-	-	-1	-1	-1	3108	1892	1892	1.0	0.6087516087516087
LTR22C	LTR22C	31	31	27	ident_name	-	-	-1	-1	-1	12313	7382	7382	1.0	0.5995289531389588
LTR6B	LTR6B	174	174	170	ident_name	-	-	-1	-1	-1	89179	79222	79222	1.0	0.8883481537133182
HERVS71	HERVS71-int	193	193	164	ident_name(-int)	-	-	-1	-1	-1	324725	287048	286804	0.9991499679496112	0.8832211871583647
tRNA-Ala-GCG	tRNA-Ala-GCG	23	23	10	ident_name	-	-	-1	-1	-1	1440	683	683	1.0	0.47430555555555554
LTR2752	LTR2752	198	198	162	ident_name	-	-	-1	-1	-1	186392	114869	114648	0.9980760692615066	0.6150907764281729
LTR37-int	LTR37-int	1632	1632	574	ident_name	-	-	-1	-1	-1	645383	108973	108919	0.999504464408615	0.16876645340828625
LTR90A	LTR90A	572	572	57	ident_name	-	-	-1	-1	-1	128322	2850	2850	1.0	0.022209753588628606
EUTREP4	EUTREP4	402	402	52	ident_name	-	-	-1	-1	-1	67903	2772	2772	1.0	0.04082293860359631
LTR1B	LTR1B	401	401	339	ident_name	-	-	-1	-1	-1	240695	178725	178725	1.0	0.7425372359209789
LTR69	LTR69	145	145	125	ident_name	-	-	-1	-1	-1	53651	32344	32344	1.0	0.6028592197722317
SVA_B	SVA_B	275	275	219	ident_name	-	-	-1	-1	-1	183503	165673	140715	0.8493538476396275	0.7668267003809202
L1MEg2	L1MEg2	684	684	63	top50consensus	1612	2341.0	2927	27	2.7613207547169814	285590	4930	4930	1.0	0.017262509191498302
Tigger6	Tigger6	74	74	51	ident_name	-	-	-1	-1	-1	26972	13778	13778	1.0	0.5108260418211479
Tigger6b	Tigger6b	207	207	134	ident_name	-	-	-1	-1	-1	53610	25209	25209	1.0	0.470229434806939
Charlie3	Charlie3	447	447	424	ident_name	-	-	-1	-1	-1	297423	274224	273941	0.998967996965984	0.9210484730501676
X9b_DNA	X9b_DNA	760	760	76	ident_name	-	-	-1	-1	-1	191263	4622	4622	1.0	0.024165677627141686
tRNA-Glu-GAG	tRNA-Glu-GAG	55	55	41	ident_name	-	-	-1	-1	-1	2771	1957	1957	1.0	0.7062432334897149
tRNA-Lys-AAA	tRNA-Lys-AAA	46	46	28	ident_name	-	-	-1	-1	-1	2793	1657	1657	1.0	0.5932688865019692
L1MEg1	L1MEg1	1039	1039	51	top50consensus	1303	2032.0	2135	26	2.3307860262008733	389041	2648	2648	1.0	0.0068064805508930935
UCON96	UCON96	27	27	2	ident_name	-	-	-1	-1	-1	3152	102	102	1.0	0.03236040609137056
L1M2a1	L1M2a1	135	135	71	top50consensus	3832	5669.0	6920	22	5.800502933780385	114537	39332	36408	0.9256584968981999	0.3178710809607376
UCON1	UCON1	266	266	40	ident_name	-	-	-1	-1	-1	70369	2133	2133	1.0	0.0303116429109409
UCON12A	UCON12A	27	27	10	ident_name	-	-	-1	-1	-1	4731	796	796	1.0	0.16825195518917777
Eulor2B	Eulor2B	80	80	13	ident_name	-	-	-1	-1	-1	13389	732	732	1.0	0.05467174546269325
tRNA-Leu-TTG	tRNA-Leu-TTG	23	23	10	ident_name	-	-	-1	-1	-1	1549	612	612	1.0	0.395093608779858
Eulor3	Eulor3	50	50	15	ident_name	-	-	-1	-1	-1	8037	754	741	0.9827586206896551	0.09219858156028368
X21_LINE	X21_LINE	41	41	14	ident_name	-	-	-1	-1	-1	7194	915	915	1.0	0.12718932443703085
tRNA-Ile-ATA	tRNA-Ile-ATA	94	94	32	ident_name	-	-	-1	-1	-1	4168	1326	1326	1.0	0.31813819577735125
UCON56	UCON56	24	24	5	ident_name	-	-	-1	-1	-1	2566	229	229	1.0	0.08924395946999221
LTR52-int	LTR52-int	167	167	99	ident_name	-	-	-1	-1	-1	66291	19850	19848	0.9998992443324937	0.29940715934289724
LTR43	LTR43	362	362	324	ident_name	-	-	-1	-1	-1	140959	113038	113038	1.0	0.8019211260011776
UCON40	UCON40	269	269	32	ident_name	-	-	-1	-1	-1	66249	1929	1929	1.0	0.029117420640311552
tRNA-Lys-AAG	tRNA-Lys-AAG	82	82	52	ident_name	-	-	-1	-1	-1	4176	2650	2650	1.0	0.6345785440613027
Tigger17c	Tigger17c	246	246	130	ident_name	-	-	-1	-1	-1	68057	23730	23730	1.0	0.3486783137664017
FordPrefect	FordPrefect	547	547	292	ident_name	-	-	-1	-1	-1	306114	68741	68741	1.0	0.22456013119295426
UCON94	UCON94	46	46	8	ident_name	-	-	-1	-1	-1	4748	375	375	1.0	0.07898062342038753
UCON99	UCON99	78	78	12	ident_name	-	-	-1	-1	-1	13473	546	509	0.9322344322344323	0.03777926222816003
L1PBb	L1PBb	234	234	146	top50consensus	5532	7214.0	8140	38	2.6935804103242886	316400	170022	169891	0.9992295114749856	0.5369500632111252
EuthAT-N1	EuthAT-N1	109	109	19	ident_name	-	-	-1	-1	-1	18645	1728	1728	1.0	0.09267900241351569
MER66D	MER66D	260	260	210	ident_name	-	-	-1	-1	-1	80397	50409	50375	0.9993255172687417	0.6265781061482394
MER68C	MER68C	152	152	82	ident_name	-	-	-1	-1	-1	45022	9389	9389	1.0	0.20854249033805694
LTR108e_Mam	LTR108e_Mam	207	207	61	ident_name	-	-	-1	-1	-1	63927	6725	6725	1.0	0.10519811660174887
tRNA-Thr-ACG	tRNA-Thr-ACG	3	3	3	ident_name	-	-	-1	-1	-1	209	180	180	1.0	0.861244019138756
Charlie30a	Charlie30a	284	284	35	ident_name	-	-	-1	-1	-1	92213	2107	2099	0.996203132415757	0.02276251721557698
MER76	MER76	732	732	494	ident_name	-	-	-1	-1	-1	280472	84212	84212	1.0	0.30025100544795913
Eulor9B	Eulor9B	60	60	10	ident_name	-	-	-1	-1	-1	7512	634	634	1.0	0.08439829605963792
X8_LINE	X8_LINE	130	130	22	ident_name	-	-	-1	-1	-1	26950	1471	1471	1.0	0.05458256029684601
CR1-L3A_Croc	CR1-L3A_Croc	41	41	0	ident_name	-	-	-1	-1	-1	7367	None	None	None	-1
LTR27B	LTR27B	137	137	114	ident_name	-	-	-1	-1	-1	54717	37538	37538	1.0	0.6860390737796297
LTR19-int	LTR19-int	237	237	182	ident_name	-	-	-1	-1	-1	190952	156912	156912	1.0	0.8217353052075914
tRNA-Ser-AGY	tRNA-Ser-AGY	13	13	10	ident_name	-	-	-1	-1	-1	911	722	722	1.0	0.7925356750823271
HERVIP10B3	HERVIP10B3-int	214	214	194	ident_name(-int)	-	-	-1	-1	-1	305692	219780	219541	0.9989125489125489	0.7181771194535677
MER57C1	MER57C1	169	169	132	ident_name	-	-	-1	-1	-1	46147	23819	23783	0.9984886015365885	0.5153747805924546
Merlin1_HS	Merlin1_HS	51	51	44	ident_name	-	-	-1	-1	-1	16846	12839	12839	1.0	0.762139380268313
LTR59	LTR59	120	120	95	ident_name	-	-	-1	-1	-1	40075	28989	28989	1.0	0.7233686837180286
LTR108a_Mam	LTR108a_Mam	86	86	52	ident_name	-	-	-1	-1	-1	27626	6882	6882	1.0	0.24911315427495836
L1P3b	L1P3b	91	91	59	top50consensus	2399	2780.0	2194	26	3.4660347551342814	48111	18664	18664	1.0	0.38793623079960926
Chompy-6_Croc	Chompy-6_Croc	1	1	0	ident_name	-	-	-1	-1	-1	111	None	None	None	-1
PRIMAX-int	PRIMAX-int	65	65	14	ident_name	-	-	-1	-1	-1	25343	4479	4479	1.0	0.17673519314998223
L1P4b	L1P4b	203	203	94	top50consensus	4318	4335.0	6876	25	4.4794788273615636	155929	41073	39719	0.967034304774426	0.2547249068486298
UCON39	UCON39	223	223	5	ident_name	-	-	-1	-1	-1	28779	223	223	1.0	0.007748705653427846
UCON5	UCON5	153	153	21	ident_name	-	-	-1	-1	-1	25767	918	918	1.0	0.03562696472231924
MER61F	MER61F	161	161	138	ident_name	-	-	-1	-1	-1	68918	49714	49681	0.9993362030816269	0.7208711802431875
PRIMA4-int	PRIMA4-int	249	249	168	ident_name	-	-	-1	-1	-1	165143	124907	124793	0.9990873209667993	0.755666301326729
LTR72B	LTR72B	147	147	136	ident_name	-	-	-1	-1	-1	50099	39118	39118	1.0	0.7808139883031597
L1P4e	L1P4e	235	235	131	top50consensus	3512	4968.0	6701	25	5.0307807807807805	151529	53370	53370	1.0	0.3522098080235466
LTR27E	LTR27E	241	241	218	ident_name	-	-	-1	-1	-1	180527	77221	77099	0.9984201188795794	0.42707739008569356
MER30B	MER30B	186	186	172	ident_name	-	-	-1	-1	-1	30123	25404	25404	1.0	0.8433422965840056
UCON31	UCON31	149	149	22	ident_name	-	-	-1	-1	-1	28668	1423	1423	1.0	0.04963722617552672
LTR22C0	LTR22C0	106	106	97	ident_name	-	-	-1	-1	-1	45710	37209	37209	1.0	0.814023189674032
LTR68	LTR68	365	365	135	ident_name	-	-	-1	-1	-1	119677	17220	17220	1.0	0.143887296640123
Tigger17d	Tigger17d	254	254	146	ident_name	-	-	-1	-1	-1	67488	29765	29718	0.9984209642197212	0.4403449502133713
LTR25-int	LTR25-int	648	648	474	ident_name	-	-	-1	-1	-1	640968	363686	363568	0.9996755442882047	0.5672170841602077
MER75A	MER75A	83	83	61	ident_name	-	-	-1	-1	-1	6097	3856	3856	1.0	0.6324421846809907
CR1-13_AMi	CR1-13_AMi	35	35	0	ident_name	-	-	-1	-1	-1	7634	None	None	None	-1
UCON28b	UCON28b	90	90	12	ident_name	-	-	-1	-1	-1	24539	1239	1239	1.0	0.050491055055218226
MER133B	MER133B	93	93	7	ident_name	-	-	-1	-1	-1	7712	255	255	1.0	0.033065352697095436
MER132	MER132	46	46	11	ident_name	-	-	-1	-1	-1	5384	629	629	1.0	0.11682763744427935
Eulor4	Eulor4	47	47	8	ident_name	-	-	-1	-1	-1	9210	654	654	1.0	0.07100977198697069
X13_LINE	X13_LINE	139	139	21	ident_name	-	-	-1	-1	-1	35009	1349	1349	1.0	0.03853294867034191
MARE6	MARE6	264	264	27	ident_name	-	-	-1	-1	-1	85267	2580	2580	1.0	0.030257895786177536
UCON76	UCON76	191	191	20	ident_name	-	-	-1	-1	-1	43262	1468	1468	1.0	0.03393278165595673
Eulor6B	Eulor6B	89	89	24	ident_name	-	-	-1	-1	-1	15996	1854	1839	0.9919093851132686	0.11496624156039009
UCON9	UCON9	114	114	19	ident_name	-	-	-1	-1	-1	27937	1615	1615	1.0	0.05780864087053012
UCON12	UCON12	63	63	16	ident_name	-	-	-1	-1	-1	10631	798	798	1.0	0.07506349355657982
tRNA-Ile-ATC	tRNA-Ile-ATC	36	36	6	ident_name	-	-	-1	-1	-1	2019	444	444	1.0	0.2199108469539376
MER123	MER123	69	69	8	ident_name	-	-	-1	-1	-1	11440	693	679	0.9797979797979798	0.059353146853146854
MER95	MER95	140	140	109	ident_name	-	-	-1	-1	-1	40041	21483	21483	1.0	0.5365250618116431
Eulor6A	Eulor6A	42	42	4	ident_name	-	-	-1	-1	-1	6107	226	226	1.0	0.037006713607335845
UCON97	UCON97	54	54	12	ident_name	-	-	-1	-1	-1	8297	737	737	1.0	0.08882728697119441
CR1-3_Croc	CR1-3_Croc	34	34	0	ident_name	-	-	-1	-1	-1	5660	None	None	None	-1
Eulor5A	Eulor5A	177	177	30	ident_name	-	-	-1	-1	-1	30006	2480	2456	0.9903225806451613	0.08185029660734519
UCON64	UCON64	107	107	12	ident_name	-	-	-1	-1	-1	19690	637	622	0.9764521193092621	0.03158963941086846
UCON2	UCON2	192	192	30	ident_name	-	-	-1	-1	-1	34649	1749	1732	0.9902801600914809	0.0499870126121966
MARE11	MARE11	15	15	2	ident_name	-	-	-1	-1	-1	2001	292	292	1.0	0.14592703648175911
HERV9NC	HERV9NC-int	380	380	299	ident_name(-int)	-	-	-1	-1	-1	758301	679718	677905	0.9973327173916242	0.8939787762379319
UCON28a	UCON28a	159	159	30	ident_name	-	-	-1	-1	-1	37439	2689	2662	0.9899590925994793	0.071102326451027
MER61E	MER61E	243	243	208	ident_name	-	-	-1	-1	-1	97628	76677	76650	0.9996478735474784	0.785123120416274
UCON100	UCON100	25	25	4	ident_name	-	-	-1	-1	-1	2353	222	222	1.0	0.09434764130896728
tRNA-Arg-AGA	tRNA-Arg-AGA	47	47	22	ident_name	-	-	-1	-1	-1	2304	1009	1009	1.0	0.4379340277777778
LTR18A	LTR18A	186	186	165	ident_name	-	-	-1	-1	-1	59314	41732	41732	1.0	0.7035775702195097
HERVL18	HERVL18-int	534	534	422	ident_name(-int)	-	-	-1	-1	-1	394505	315802	315578	0.9992906948024395	0.7999340946249097
UCON60	UCON60	152	152	7	ident_name	-	-	-1	-1	-1	25475	344	344	1.0	0.013503434739941119
MER72B	MER72B	212	212	158	ident_name	-	-	-1	-1	-1	82749	41858	41858	1.0	0.5058429709120352
LTR47B3	LTR47B3	108	108	98	ident_name	-	-	-1	-1	-1	33895	24453	24453	1.0	0.7214338397993805
L1M3b	L1M3b	767	767	181	top50consensus	3164	5044.0	6043	65	3.427680090754396	495088	49387	49387	1.0	0.09975398313027178
Charlie9	Charlie9	344	344	89	ident_name	-	-	-1	-1	-1	86106	16477	16477	1.0	0.1913571644252433
LTR9C	LTR9C	185	185	163	ident_name	-	-	-1	-1	-1	81662	52463	52441	0.9995806568438709	0.6421713893855159
LTR47B	LTR47B	44	44	36	ident_name	-	-	-1	-1	-1	12458	8823	8823	1.0	0.7082196179161985
UCON80_AMi	UCON80_AMi	71	71	5	ident_name	-	-	-1	-1	-1	8122	263	263	1.0	0.03238118689977838
UCON80	UCON80	39	39	8	ident_name	-	-	-1	-1	-1	4093	402	402	1.0	0.09821646713901784
HERVL74	HERVL74-int	347	347	238	ident_name(-int)	-	-	-1	-1	-1	162024	74536	74506	0.9995975099280885	0.45984545499432183
MARE10	MARE10	117	117	20	ident_name	-	-	-1	-1	-1	19172	1281	1281	1.0	0.066816190277488
LTR06	LTR06	98	98	73	ident_name	-	-	-1	-1	-1	30349	19279	19279	1.0	0.6352433358595011
HUERS-P2	HUERS-P2-int	227	227	193	ident_name(-int)	-	-	-1	-1	-1	233091	175620	175508	0.9993622594237558	0.752959144711722
LTR18C	LTR18C	76	76	67	ident_name	-	-	-1	-1	-1	22412	16117	16117	1.0	0.7191236837408531
MER92D	MER92D	220	220	133	ident_name	-	-	-1	-1	-1	51254	14007	14007	1.0	0.273285987435127
MER83C	MER83C	181	181	152	ident_name	-	-	-1	-1	-1	51326	31874	31874	1.0	0.6210107937497564
L1P4a	L1P4a	617	617	396	top50consensus	4853	5709.0	9199	44	3.0062091503267974	720942	319413	319306	0.9996650105036426	0.4429010932918321
HERVP71A	HERVP71A-int	199	199	182	ident_name(-int)	-	-	-1	-1	-1	256044	226669	226634	0.9998455898248106	0.8851369295902267
UCON66	UCON66	96	96	7	ident_name	-	-	-1	-1	-1	20991	410	410	1.0	0.019532180458291647
UCON18	UCON18	32	32	7	ident_name	-	-	-1	-1	-1	7219	375	375	1.0	0.051946252943621
UCON101	UCON101	411	411	8	ident_name	-	-	-1	-1	-1	83820	347	347	1.0	0.004139823431162014
MER101B	MER101B	308	308	171	ident_name	-	-	-1	-1	-1	91087	34479	34447	0.9990718988369732	0.37817690779145213
Eulor6D	Eulor6D	114	114	16	ident_name	-	-	-1	-1	-1	20049	886	886	1.0	0.044191730260860894
HERVL32	HERVL32-int	147	147	105	ident_name(-int)	-	-	-1	-1	-1	87371	46967	46967	1.0	0.5375582287028877
LTR58	LTR58	83	83	66	ident_name	-	-	-1	-1	-1	27075	17834	17834	1.0	0.6586888273314866
tRNA-Arg-CGY	tRNA-Arg-CGY	49	49	34	ident_name	-	-	-1	-1	-1	2624	1678	1678	1.0	0.6394817073170732
Eulor8	Eulor8	190	190	48	ident_name	-	-	-1	-1	-1	43958	3410	3279	0.9615835777126099	0.07459393057008963
LTR22E	LTR22E	120	120	110	ident_name	-	-	-1	-1	-1	49356	38925	38888	0.9990494540783558	0.787908258367777
LTR73	LTR73	213	213	178	ident_name	-	-	-1	-1	-1	81509	53249	53249	1.0	0.6532898207559902
MER68-int	MER68-int	350	350	185	ident_name	-	-	-1	-1	-1	176062	51387	51356	0.9993967345826765	0.29169269916279494
Kanga1	Kanga1	380	380	152	ident_name	-	-	-1	-1	-1	109270	17472	17472	1.0	0.15989750160153748
Penelope1_Vert	Penelope1_Vert	84	84	16	ident_name	-	-	-1	-1	-1	20638	1280	1280	1.0	0.062021513712569046
UCON28c	UCON28c	77	77	10	ident_name	-	-	-1	-1	-1	20593	729	729	1.0	0.03540037876948478
Eulor5B	Eulor5B	72	72	11	ident_name	-	-	-1	-1	-1	9006	744	744	1.0	0.08261159227181879
X7D_LINE	X7D_LINE	24	24	2	ident_name	-	-	-1	-1	-1	2681	168	168	1.0	0.06266318537859007
LTR19C	LTR19C	188	188	130	ident_name	-	-	-1	-1	-1	87137	36938	36938	1.0	0.42390718064656807
Eulor6C	Eulor6C	38	38	4	ident_name	-	-	-1	-1	-1	4742	223	216	0.968609865470852	0.04555040067482075
LTR35B	LTR35B	241	241	141	ident_name	-	-	-1	-1	-1	77951	18984	18984	1.0	0.24353760695821733
LTR22B	LTR22B	147	147	145	ident_name	-	-	-1	-1	-1	63777	50774	50774	1.0	0.7961177226899979
UCON51	UCON51	49	49	3	ident_name	-	-	-1	-1	-1	7537	265	265	1.0	0.03515987793551811
UCON15	UCON15	71	71	6	ident_name	-	-	-1	-1	-1	12089	276	276	1.0	0.022830672512201174
Tigger17b	Tigger17b	84	84	60	ident_name	-	-	-1	-1	-1	40986	21641	21641	1.0	0.5280095642414483
UCON9B	UCON9B	89	89	29	ident_name	-	-	-1	-1	-1	27874	2454	2454	1.0	0.088039032790414
LTR27D	LTR27D	283	283	212	ident_name	-	-	-1	-1	-1	122749	65351	64931	0.9935731664396872	0.5289737594603622
UCON83	UCON83	146	146	6	ident_name	-	-	-1	-1	-1	14297	224	224	1.0	0.015667622578163252
UCON62	UCON62	42	42	4	ident_name	-	-	-1	-1	-1	4927	226	226	1.0	0.04586969758473716
CR1-L3B_Croc	CR1-L3B_Croc	5	5	0	ident_name	-	-	-1	-1	-1	788	None	None	None	-1
HERVH48	HERVH48-int	125	125	108	ident_name(-int)	-	-	-1	-1	-1	211309	175065	174970	0.9994573444149316	0.8280290948326858
Eulor7	Eulor7	18	18	1	ident_name	-	-	-1	-1	-1	2249	82	82	1.0	0.03646064917741218
HERVKC4	HERVKC4-int	93	93	54	ident_name(-int)	-	-	-1	-1	-1	73430	49213	49151	0.9987401702802106	0.6693585727904127
MER76-int	MER76-int	160	160	90	ident_name	-	-	-1	-1	-1	96904	26682	26621	0.9977138145566299	0.2747151820358293
MER52-int	MER52-int	385	385	312	ident_name	-	-	-1	-1	-1	506359	366938	363453	0.9905024827082505	0.7177773081943838
ERVL47	ERVL47-int	216	216	94	ident_name(-int)	-	-	-1	-1	-1	132726	55325	55315	0.9998192498870312	0.4167608456519446
tRNA-Phe-TTY	tRNA-Phe-TTY	49	49	31	ident_name	-	-	-1	-1	-1	2526	1559	1559	1.0	0.617181314330958
tRNA-Cys-TGY	tRNA-Cys-TGY	168	168	112	ident_name	-	-	-1	-1	-1	8258	5248	5248	1.0	0.6355049648825382
X12_LINE	X12_LINE	73	73	6	ident_name	-	-	-1	-1	-1	12974	425	425	1.0	0.032757823338985664
LTR22	LTR22	99	99	97	ident_name	-	-	-1	-1	-1	49691	46157	46157	1.0	0.9288804813748969
Eulor6E	Eulor6E	45	45	4	ident_name	-	-	-1	-1	-1	6414	304	304	1.0	0.0473963205487995
MER67D	MER67D	1259	1259	1022	ident_name	-	-	-1	-1	-1	456107	202728	202728	1.0	0.4444746517812706
UCON103	UCON103	29	29	6	ident_name	-	-	-1	-1	-1	7324	784	784	1.0	0.10704533042053523
MER87B	MER87B	221	221	170	ident_name	-	-	-1	-1	-1	70759	45306	45283	0.9994923409702909	0.6399609943611413
Charlie11	Charlie11	103	103	24	ident_name	-	-	-1	-1	-1	45382	4362	4362	1.0	0.09611740337578775
MER92C	MER92C	121	121	91	ident_name	-	-	-1	-1	-1	36587	17708	17708	1.0	0.4839970481318501
LTR10B1	LTR10B1	188	188	132	ident_name	-	-	-1	-1	-1	58900	33394	33394	1.0	0.5669609507640068
MER50C	MER50C	121	121	84	ident_name	-	-	-1	-1	-1	49550	15125	15097	0.9981487603305785	0.3046821392532795
HERVI	HERVI-int	64	64	54	ident_name(-int)	-	-	-1	-1	-1	141747	101640	101515	0.9987701692247147	0.7161703598665228
LTR60	LTR60	40	40	27	ident_name	-	-	-1	-1	-1	6540	4091	4091	1.0	0.6255351681957186
LTR3	LTR3	77	77	77	ident_name	-	-	-1	-1	-1	30113	27501	27501	1.0	0.9132600537973633
HERVK3	HERVK3-int	310	310	249	ident_name(-int)	-	-	-1	-1	-1	336488	284517	284418	0.9996520418815045	0.8452545113050094
L1P	L1P	175	175	100	top50consensus	509	1197.0	341	2	2.643410852713178	16317	5973	5973	1.0	0.3660599374885089
LTR108d_Mam	LTR108d_Mam	68	68	36	ident_name	-	-	-1	-1	-1	25013	4346	4346	1.0	0.1737496501819054
MER83A-int	MER83A-int	93	93	67	ident_name	-	-	-1	-1	-1	63410	43002	43002	1.0	0.6781580192398675
tRNA-Leu-CTG	tRNA-Leu-CTG	18	18	15	ident_name	-	-	-1	-1	-1	1212	1013	1013	1.0	0.8358085808580858
EUTREP15	EUTREP15	210	210	40	ident_name	-	-	-1	-1	-1	66179	3209	3209	1.0	0.048489702171383674
tRNA-Gln-CAA	tRNA-Gln-CAA	30	30	15	ident_name	-	-	-1	-1	-1	1552	791	791	1.0	0.5096649484536082
Charlie6	Charlie6	248	248	145	ident_name	-	-	-1	-1	-1	124518	41733	41733	1.0	0.33515636293547924
LTR72	LTR72	150	150	136	ident_name	-	-	-1	-1	-1	53176	41285	41285	1.0	0.7763840830449827
UCON71	UCON71	32	32	13	ident_name	-	-	-1	-1	-1	5674	722	722	1.0	0.12724709199859005
tRNA-Met-i	tRNA-Met-i	50	50	17	ident_name	-	-	-1	-1	-1	3042	1019	1019	1.0	0.3349769888231427
MARE9	MARE9	52	52	12	ident_name	-	-	-1	-1	-1	5442	1319	1319	1.0	0.24237412715913267
X1_LR	X1_LR	16	16	8	ident_name	-	-	-1	-1	-1	1921	535	535	1.0	0.27850078084331076
tRNA-Ala-GCA	tRNA-Ala-GCA	28	28	16	ident_name	-	-	-1	-1	-1	1724	1007	1007	1.0	0.584106728538283
EuthAT-N1a	EuthAT-N1a	47	47	13	ident_name	-	-	-1	-1	-1	7215	997	997	1.0	0.13818433818433817
UCON23	UCON23	39	39	12	ident_name	-	-	-1	-1	-1	4893	886	886	1.0	0.18107500510933988
tRNA-Gly-GGY	tRNA-Gly-GGY	49	49	32	ident_name	-	-	-1	-1	-1	2593	1616	1616	1.0	0.6232163517161589
LTR14C	LTR14C	133	133	129	ident_name	-	-	-1	-1	-1	67877	65692	65692	1.0	0.9678094199802584
LTR10G	LTR10G	116	116	108	ident_name	-	-	-1	-1	-1	47506	38427	38407	0.999479532620293	0.8084662989938113
UCON59	UCON59	96	96	10	ident_name	-	-	-1	-1	-1	11333	484	466	0.9628099173553719	0.04111885643695403
tRNA-Pro-CCG	tRNA-Pro-CCG	6	6	6	ident_name	-	-	-1	-1	-1	359	341	341	1.0	0.9498607242339833
tRNA-Pro-CCY	tRNA-Pro-CCY	16	16	16	ident_name	-	-	-1	-1	-1	1094	1020	1020	1.0	0.9323583180987203
LTR38C	LTR38C	122	122	95	ident_name	-	-	-1	-1	-1	46999	31950	31950	1.0	0.6798016979084661
HERV30	HERV30-int	63	63	53	ident_name(-int)	-	-	-1	-1	-1	119202	108070	108005	0.9993985379846396	0.9060670122984513
HERV1_LTRa	HERV1_LTRa	29	29	24	ident_name	-	-	-1	-1	-1	12155	10858	10858	1.0	0.8932949403537639
UCON84	UCON84	38	38	10	ident_name	-	-	-1	-1	-1	10174	900	900	1.0	0.08846078238647533
tRNA-Tyr-TAC	tRNA-Tyr-TAC	37	37	25	ident_name	-	-	-1	-1	-1	2238	1333	1333	1.0	0.59562109025916
UCON24	UCON24	25	25	8	ident_name	-	-	-1	-1	-1	4721	557	557	1.0	0.11798347807667867
LTR108c_Mam	LTR108c_Mam	31	31	14	ident_name	-	-	-1	-1	-1	10954	1530	1530	1.0	0.13967500456454263
LTR108b_Mam	LTR108b_Mam	55	55	34	ident_name	-	-	-1	-1	-1	16585	3950	3950	1.0	0.23816701839011153
MER136	MER136	34	34	8	ident_name	-	-	-1	-1	-1	6516	719	719	1.0	0.11034376918354818
LTR109A2	LTR109A2	31	31	20	ident_name	-	-	-1	-1	-1	8243	3079	3079	1.0	0.37352905495572003
UCON17	UCON17	38	38	7	ident_name	-	-	-1	-1	-1	8467	740	740	1.0	0.08739813393173497
tRNA-Arg-AGG	tRNA-Arg-AGG	28	28	13	ident_name	-	-	-1	-1	-1	1399	689	689	1.0	0.49249463902787705
EutTc1-N1	EutTc1-N1	37	37	16	ident_name	-	-	-1	-1	-1	7326	1877	1876	0.9994672349493873	0.2560742560742561
UCON61	UCON61	17	17	8	ident_name	-	-	-1	-1	-1	1961	538	538	1.0	0.27434982151963283
MER57E3	MER57E3	265	265	159	ident_name	-	-	-1	-1	-1	55454	30791	30791	1.0	0.555253002488549
LTR70	LTR70	162	162	129	ident_name	-	-	-1	-1	-1	97770	72248	72248	1.0	0.7389587808121101
U8	U8	30	30	19	ident_name	-	-	-1	-1	-1	3389	1831	1831	1.0	0.540277367955149
HY5	HY5	21	21	18	ident_name	-	-	-1	-1	-1	1311	1036	1036	1.0	0.7902364607170099
HERVK11D	HERVK11D-int	42	42	41	ident_name(-int)	-	-	-1	-1	-1	84966	82026	82026	1.0	0.9653979238754326
HERV1_I	HERV1_I-int	71	71	52	ident_name(-int)	-	-	-1	-1	-1	135596	96337	96252	0.9991176806419133	0.7098439481990619
tRNA-Ser-TCY	tRNA-Ser-TCY	19	19	16	ident_name	-	-	-1	-1	-1	1389	1101	1101	1.0	0.7926565874730022
UCON67	UCON67	25	25	7	ident_name	-	-	-1	-1	-1	2223	456	456	1.0	0.20512820512820512
tRNA-Val-GTA	tRNA-Val-GTA	15	15	7	ident_name	-	-	-1	-1	-1	890	459	459	1.0	0.5157303370786517
tRNA-Leu-CTY	tRNA-Leu-CTY	26	26	17	ident_name	-	-	-1	-1	-1	1821	1274	1274	1.0	0.6996155958264689
MER9B	MER9B	38	38	34	ident_name	-	-	-1	-1	-1	15879	14675	14675	1.0	0.9241765854272939
EUTREP6	EUTREP6	16	16	5	ident_name	-	-	-1	-1	-1	1818	293	293	1.0	0.16116611661166116
tRNA-Ser-TCG	tRNA-Ser-TCG	6	6	6	ident_name	-	-	-1	-1	-1	443	427	427	1.0	0.963882618510158
tRNA-Trp-TGG	tRNA-Trp-TGG	16	16	10	ident_name	-	-	-1	-1	-1	892	633	633	1.0	0.7096412556053812
UCON75	UCON75	34	34	6	ident_name	-	-	-1	-1	-1	6598	639	639	1.0	0.09684752955441042
HERV1_LTRe	HERV1_LTRe	37	37	23	ident_name	-	-	-1	-1	-1	14847	5966	5966	1.0	0.40183201993668755
HERV-Fc1_LTR1	HERV-Fc1_LTR1	18	18	17	ident_name	-	-	-1	-1	-1	6113	5252	5252	1.0	0.859152625552102
HERV-Fc1_LTR2	HERV-Fc1_LTR2	3	3	3	ident_name	-	-	-1	-1	-1	1282	1207	1207	1.0	0.9414976599063962
HERV-Fc1	HERV-Fc1-int	8	8	6	ident_name(-int)	-	-	-1	-1	-1	25663	25330	25330	1.0	0.9870241203288781
U14	U14	7	7	6	ident_name	-	-	-1	-1	-1	584	351	351	1.0	0.601027397260274
HERV1_LTRc	HERV1_LTRc	32	32	31	ident_name	-	-	-1	-1	-1	13986	13216	13216	1.0	0.944944944944945
HERV15	HERV15-int	102	102	85	ident_name(-int)	-	-	-1	-1	-1	191365	144887	144796	0.9993719243272343	0.756648289917174
HERV-Fc1_LTR3	HERV-Fc1_LTR3	5	5	5	ident_name	-	-	-1	-1	-1	2362	2353	2353	1.0	0.9961896697713802
tRNA-Ala-GCY	tRNA-Ala-GCY	36	36	31	ident_name	-	-	-1	-1	-1	2469	2174	2174	1.0	0.8805184285135682
tRNA-Pro-CCA	tRNA-Pro-CCA	9	9	9	ident_name	-	-	-1	-1	-1	620	593	593	1.0	0.9564516129032258
HERV1_LTRb	HERV1_LTRb	15	15	10	ident_name	-	-	-1	-1	-1	4999	4350	4350	1.0	0.8701740348069614
UCON68	UCON68	17	17	6	ident_name	-	-	-1	-1	-1	1309	267	267	1.0	0.20397249809014514
tRNA-Tyr-TAT	tRNA-Tyr-TAT	8	8	5	ident_name	-	-	-1	-1	-1	357	208	208	1.0	0.5826330532212886
tRNA-Arg-CGA	tRNA-Arg-CGA	15	15	12	ident_name	-	-	-1	-1	-1	1011	725	725	1.0	0.7171117705242335
CR1-11_Crp	CR1-11_Crp	10	10	0	ident_name	-	-	-1	-1	-1	1162	None	None	None	-1
UCON92	UCON92	2	2	1	ident_name	-	-	-1	-1	-1	236	110	110	1.0	0.4661016949152542
Charlie12	Charlie12	16	16	10	ident_name	-	-	-1	-1	-1	6879	5681	5681	1.0	0.8258467800552406
DNA-12_Crp	DNA-12_Crp	1	1	1	top50consensus	150	150.0	150	0	1.0	150	150	150	1.0	1.0
HERVK-full	HERVK-int,LTR5_Hs,LTR5A,LTR5B,LTR5	1729	216,609,336,501,67	1551	manual,manual,manual,manual,manual	-	-	-1	-1	-1	1643180	1300597	1299020	0.9987874799034597	0.7905524653415937
HERVH-full	HERVH-int,LTR7,LTR7Y,LTR7B,LTR7C	9453	5610,2095,455,778,515	9153	manual,manual,manual,manual,manual	-	-	-1	-1	-1	6889466	6317496	6280386	0.9941258371987889	0.9115925675516796

Summary Information on hg38reps sequences and chains

All sequences can be downloaded directly via the Table Browser. (Tools->TableBrowser) The above table is available via the “Repeat Browser Consensus” track or through the links on the data page.